Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PA14_42350 |
Symbol | pscC |
ID | 4380352 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas aeruginosa UCBPP-PA14 |
Kingdom | Bacteria |
Replicon accession | NC_008463 |
Strand | - |
Start bp | 3773504 |
End bp | 3775306 |
Gene Length | 1803 bp |
Protein Length | 600 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 639325964 |
Product | Type III secretion outer membrane protein PscC precursor |
Protein accession | YP_791529 |
Protein GI | 116049666 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1450] Type II secretory pathway, component PulD |
TIGRFAM ID | [TIGR02516] type III secretion outer membrane pore, YscC/HrcC family |
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Plasmid Coverage information |
Num covering plasmid clones | 36 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 69 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGCCGCC TGCTGATCGG CGGACTGCTG GCGCTGCTGC CTGGCGCGGT CTTGCGCGCG CAGCCGCTGG ACTGGCCCAG CCTGCCTTAC GACTATGTGG CGCAGGGCGA AAGCCTGCGC GACGTGCTGG CCAACTTCGG CGCCAACTAC GATGCCTCGG TGATCGTCAG CGACAAGGTC AACGACCAGG TCAGCGGTCG CTTCGACCTG GAAAGCCCGC AGGCCTTCCT GCAGTTGATG GCCTCCCTCT ACAACCTCGG CTGGTACTAC GACGGCACCG TGCTGTACGT ATTCAAGACC ACCGAGATGC AGTCGCGGCT GGTGAGGCTG GAGCAGGTCG GCGAGGCCGA GCTGAAGCGC GCGCTGACCG CCGCCGGCAT CTGGGAACCG CGCTTCGGCT GGCGTGCCGA CCCTTCCGGG CGGCTGGTGC ACGTGTCCGG TCCGGGGCGC TATCTCGAAC TGGTCGAGCA GACCGCCCAG GTGCTGGAGC AGCAATACAC CCTGCGCAGC GAAAAGACCG GCGACCTCAG CGTGGAGATC TTCCCGCTGC GCTATGCGGT CGCCGAGGAC CGCAAGATCG AGTACCGCGA CGACGAGATC GAGGCGCCGG GCATCGCCAG CATCCTCTCG CGGGTGCTCA GCGATGCCAA CGTGGTTGCG GTGGGCGACG AGCCGGGCAA GCTGCGCCCG GGACCGCAAT CGAGCCATGC GGTGGTCCAG GCGGAACCGT CGCTGAACGC GGTGGTGGTG CGCGACCACA AGGACCGGTT GCCCATGTAT CGCCGCCTGA TCGAAGCCCT CGACCGGCCC TCGGCGCGGA TCGAGGTCGG CTTGTCGATC ATCGACATCA ATGCCGAGAA CCTCGCCCAG CTGGGCGTCG ACTGGAGCGC CGGGATTCGC CTGGGCAACA ACAAGTCGAT CCAGATCCGC ACCACCGGCC AGGATAGCGA GGAGGGCGGC GGCGCCGGTA ACGGCGCGGT CGGCAGCCTG GTGGACAGTC GCGGGCTGGA TTTCCTGCTG GCCAAGGTCA CCCTGTTGCA GAGCCAGGGG CAGGCGCAGA TCGGATCCCG GCCGACCCTG CTGACCCAGG AGAATACCCA GGCGGTGCTC GACCAGAGCG AAACCTACTA TGTGCGGGTC ACGGGCGAGC GGGTGGCCGA GCTGAAGGCG ATCACCTACG GCACCATGCT GAAAATGACG CCGCGAGTGG TGACTCTCGG CGATACGCCG GAGATCAGCC TCAGCCTGCA CATCGAGGAC GGCAGCCAGA AACCCAACAG CGCCGGCCTG GACAAGATCC CCACGATCAA CCGCACGGTG ATCGATACCA TCGCCCGCGT GGGCCATGGC CAGAGCCTGC TGATCGGCGG CATCTACCGC GACGAACTGA GCCAGAGCCA GCGCAAGGTA CCCTGGCTCG GCGACATTCC CTATCTCGGC GCGCTGTTCC GCACTACCGC GGACACCGTG CGCCGCTCGG TGCGGCTGTT CCTCATCGAG CCGCGGCTGA TCGACGATGG CGTCGGCCAT TACCTGGCGC TGAACAACCG TCGCGACCTG CGCGGTGGCC TGCTTGAAGT CGACGAGTTG TCGAACCAGA GCCTGTCGTT GCGCAAGCTG CTCGGTAGCG CCCGTTGCCA GGCGCTGGCG CCGGCCAGGG CCGAACAGGA GCGCTTGCGC CAGGCCGGCC AGGGTTCGTT CCTCACGCCC TGCCGGATGG GTGCGCAGGA GGGCTGGCGG GTGACCGACA GCGCCTGTCC CAAGGACGGC GCCTGGTGCG TCGGCGCGGA GCGCGGGAAT TAG
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Protein sequence | MRRLLIGGLL ALLPGAVLRA QPLDWPSLPY DYVAQGESLR DVLANFGANY DASVIVSDKV NDQVSGRFDL ESPQAFLQLM ASLYNLGWYY DGTVLYVFKT TEMQSRLVRL EQVGEAELKR ALTAAGIWEP RFGWRADPSG RLVHVSGPGR YLELVEQTAQ VLEQQYTLRS EKTGDLSVEI FPLRYAVAED RKIEYRDDEI EAPGIASILS RVLSDANVVA VGDEPGKLRP GPQSSHAVVQ AEPSLNAVVV RDHKDRLPMY RRLIEALDRP SARIEVGLSI IDINAENLAQ LGVDWSAGIR LGNNKSIQIR TTGQDSEEGG GAGNGAVGSL VDSRGLDFLL AKVTLLQSQG QAQIGSRPTL LTQENTQAVL DQSETYYVRV TGERVAELKA ITYGTMLKMT PRVVTLGDTP EISLSLHIED GSQKPNSAGL DKIPTINRTV IDTIARVGHG QSLLIGGIYR DELSQSQRKV PWLGDIPYLG ALFRTTADTV RRSVRLFLIE PRLIDDGVGH YLALNNRRDL RGGLLEVDEL SNQSLSLRKL LGSARCQALA PARAEQERLR QAGQGSFLTP CRMGAQEGWR VTDSACPKDG AWCVGAERGN
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