| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PA14_41570 |
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| Symbol | oprF |
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| ID | 4382883 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas aeruginosa UCBPP-PA14 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008463 |
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| Strand | - |
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| Start bp | 3712447 |
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| End bp | 3713499 |
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| Gene Length | 1053 bp |
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| Protein Length | 350 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 639325903 |
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| Product | major porin and structural outer membrane porin OprF precursor |
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| Protein accession | YP_791468 |
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| Protein GI | 116049726 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG2885] Outer membrane protein and related peptidoglycan-associated (lipo)proteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.0000000000484221 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 70 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACTGA AGAACACCTT AGGCGTTGTC ATCGGCTCGC TGGTTGCCGC TTCGGCAATG
AACGCCTTTG CCCAGGGCCA GAACTCGGTA GAGATCGAAG CCTTCGGCAA GCGCTACTTC
ACCGACAGCG TTCGCAACAT GAAGAACGCG GACCTGTACG GCGGCTCGAT CGGTTACTTC
CTGACCGACG ACGTCGAGCT GGCGCTGTCC TACGGTGAGT ACCATGACGT TCGTGGCACC
TACGAAACCG GCAACAAGAA GGTCCACGGC AACCTGACCT CTCTGGACGC CATCTACCAC
TTCGGTACCC CGGGCGTAGG TCTGCGTCCG TACGTGTCGG CTGGTCTGGC TCACCAGAAC
ATCACCAACA TCAACAGCGA CAGCCAAGGC CGTCAGCAGA TGACCATGGC CAACATCGGC
GCTGGTCTGA AGTACTACTT CACTGAGAAC TTCTTCGCCA AGGCCAGCCT CGACGGCCAG
TACGGTCTGG AGAAGCGTGA CAACGGTCAC CAGGGCGAGT GGATGGCTGG CCTGGGCGTC
GGCTTCAACT TCGGTGGTTC GAAAGCCGCT CCGGCTCCGG AACCGGTTGC CGACGTTTGC
TCCGACTCCG ACAACGACGG CGTTTGCGAC AACGTCGACA AGTGCCCGGA TACCCCGGCC
AACGTCACCG TTGACGCCAA CGGCTGCCCG GCTGTCGCCG AAGTCGTACG CGTACAGCTG
GACGTGAAGT TCGACTTCGA CAAGTCCAAG GTCAAAGAGA ATAGCTACGC TGACATCAAG
AACCTGGCTG ACTTCATGAA GCAGTACCCG TCCACTTCCA CCACCGTTGA AGGTCACACC
GACTCCGTCG GCACCGACGC TTACAACCAG AAGCTGTCCG AGCGTCGTGC CAACGCCGTT
CGTGACGTAC TGGTCAACGA GTACGGTGTA GAAGGTGGTC GCGTGAACGC TGTTGGTTAC
GGCGAGTCCC GCCCGGTTGC CGACAACGCC ACCGCTGAAG GCCGCGCTAT CAACCGTCGC
GTTGAAGCCG AAGTAGAAGC TGAAGCCAAG TAA
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| Protein sequence | MKLKNTLGVV IGSLVAASAM NAFAQGQNSV EIEAFGKRYF TDSVRNMKNA DLYGGSIGYF
LTDDVELALS YGEYHDVRGT YETGNKKVHG NLTSLDAIYH FGTPGVGLRP YVSAGLAHQN
ITNINSDSQG RQQMTMANIG AGLKYYFTEN FFAKASLDGQ YGLEKRDNGH QGEWMAGLGV
GFNFGGSKAA PAPEPVADVC SDSDNDGVCD NVDKCPDTPA NVTVDANGCP AVAEVVRVQL
DVKFDFDKSK VKENSYADIK NLADFMKQYP STSTTVEGHT DSVGTDAYNQ KLSERRANAV
RDVLVNEYGV EGGRVNAVGY GESRPVADNA TAEGRAINRR VEAEVEAEAK
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