| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PA14_38410 |
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| Symbol | amrB |
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| ID | 4380303 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas aeruginosa UCBPP-PA14 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008463 |
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| Strand | + |
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| Start bp | 3422892 |
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| End bp | 3426029 |
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| Gene Length | 3138 bp |
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| Protein Length | 1045 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 639325652 |
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| Product | multidrug efflux protein |
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| Protein accession | YP_791221 |
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| Protein GI | 116049969 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 0.0368685 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTCGTT TCTTCATTGA CCGGCCGGTC TTCGCCTGGG TGATCTCCCT GCTGATCGTG
CTCGCCGGGG TCCTGGCGAT CCGCTTCCTG CCGGTCGCCC AGTACCCGGA CATCGCGCCG
CCGGTGGTCA ACGTCAGCGC CAGCTATCCC GGCGCCTCGG CCAAGGTGGT CGAGGAAGCG
GTGACCGCGA TCATCGAGCG CGAGATGAAC GGCGCGCCCG GCCTGCTCTA CACCAAGGCC
ACCAGCAGCA CCGGCCAGGC TTCGCTGACC CTGACCTTCC GCCAGGGCGT GAACGCCGAC
CTCGCCGCGG TGGAAGTGCA GAACCGCCTG AAGATCGTCG AGTCGCGCCT GCCCGAGTCG
GTGCGGCGCG ACGGTATCTA CGTGGAGAAA GCGGCGGACA GCATCCAGCT GATCGTCACC
CTCACCTCCT CCAGCGGCCG CTACGACGCC ATGGAACTGG GCGAGATCGC CTCGTCCAAC
GTGTTGCAGG CGCTGCGCCG GGTGGAGGGC GTGGGCAAGG TCCAGACCTG GGGCGCCGAG
TACGCCATGC GCATCTGGCC CGACCCGGCC AAGCTGACCT CGATGAACCT CAGCGCCAGC
GACCTGGTCA ACGCCGTGCG CCGGCACAAC GCCCGCCTCA CCGTGGGCGA CATCGGCAAC
CTCGGGGTCC CCGACTCGGC GCCGATCAGC GCCACGGTGA AGGTCGACGA CACCCTGGTG
ACGCCCGAGC AGTTCGGCGA GATTCCGCTG CGCATCCGCG CCGACGGCGG CGCGATCCGC
CTGCGCGACG TGGCCCGCGT CGAGTTCGGC CAAAGCGAGT ACGGCTTCGT CTCGCGGGTC
AACCAGATGA CCGCCACCGG CCTGGCGGTG AAGATGGCGC CCGGCTCCAA CGCAGTGGCC
ACCGCCAAGC GCATCCGCGC CACCCTCGAC GAGCTGTCGC GCTACTTCCC GGAGGGCGTG
AGCTACAACA TCCCCTACGA CACCTCGGCG TTCGTCGAGA TCTCGATCAG GAAGGTGGTC
AGCACCCTGC TCGAGGCGAT GCTGCTGGTG TTCGCCGTGA TGTACCTGTT CATGCAGAAC
TTCCGCGCCA CCCTGATCCC GACGCTGGTG GTGCCGGTGG CCCTGCTCGG CACCTTCACG
GTGATGCTCG GCCTGGGCTT CTCGATCAAC GTGCTGACCA TGTTCGGCAT GGTCCTGGCG
ATCGGCATCC TGGTGGACGA CGCGATCATC GTGGTGGAGA ACGTCGAGCG GCTGATGGCC
CAAGAAGGCC TGTCGCCGCA CGACACCACG GTCAAGGCGA TGCGCCAAAT CAGCGGGGCC
ATCGTCGGCA TCACCGTGGT GCTGGTCTCG GTATTCGTGC CGATGGCGTT CTTCAGCGGC
GCGGTGGGCA ACATCTACCG CCAGTTCGCG GTGACCCTGG CGGTCTCCAT CGGCTTCTCG
GCGTTCCTCG CGCTGTCGCT GACCCCGGCC CTGTGCGCCA CCCTGCTGCG CCCGATCGAC
GCCGACCACC ATGAGAAGCG CGGCTTCTTC GGCTGGTTCA ACCGCGCCTT CCTGCGCCTG
ACCGGACGCT ACCGCAACGC GGTGGCCGGC ATCCTCGCCC GGCCGGTCCG CTGGATGCTG
GTCTACGCCC TGGTCATCGG CGTGGTCGCC CTGCTCTTCG TGCGCCTGCC GCAGGCGTTC
CTGCCGGAAG AGGACCAGGG CGACTTCATG ATCATGGTGA TGCAGCCCGA AGGCACGCCG
ATGGCGGAGA CCATGGCCAA CGTCGCCGAT GTAGAGCGCT ACCTGGCGGA GCACGAACCG
GTGGCCTACG CCTATGCGGT CGGCGGCTTC AGCCTGTACG GCGACGGCAC CAGCTCGGCG
ATGATCTTCG CCACCCTGAA GGACTGGTCG GAACGCCGGG AGGCCAGCCA GCACGTCGGC
GCCATCGTCG AGCGCATCAA CCAGCGCTTC GCCGGCCTGC CCAACCGTAC GGTGTATGCG
ATGAACTCGC CGCCGCTGCC GGACCTGGGT TCCACCAGCG GCTTCGACTT CCGCCTGCAG
GACCGTGGCG GGGTCGGCTA CGAGGCCCTG GTCAAGGCCC GCGACCAGTT GCTGGCGCGC
GCCGCCGAGG ACCCGCGCCT GGCCAACGTG ATGTTCGCCG GCCAGGGCGA GGCGCCGCAG
ATCCGCCTGG ACATCGACCG GCGCAAGGCG GAGACCCTCG GCGTGAGCAT GGACGAGATC
AACACCACCC TGGCGGTGAT GTTCGGCTCG GACTACATCG GCGACTTCAT GCACGGCAGC
CAGGTGCGCA AGGTGGTGGT CCAGGCCGAC GGCGCCAAGC GCCTGGGCAT CGACGACATC
GGCCGGCTTC ACGTGCGCAA CGAGCAGGGC GAGATGGTCC CGCTGGCGAC GTTCGCCAAG
GCCGCCTGGA CCCTCGGCCC GCCGCAACTG ACCCGCTACA ACGGCTATCC CTCGTTCAAC
CTCGAGGGCC AGGCCGCACC GGGCTACAGC AGCGGCGAAG CCATGCAGGC GATGGAGGAA
TTGATGCAGG GCCTGCCCGA GGGCATCGCC CACGAGTGGT CCGGCCAGTC CTTCGAAGAA
CGCCTGTCCG GCGCCCAGGC GCCGGCGCTG TTCGCCCTCT CGGTGCTGAT CGTGTTCCTC
GCCCTGGCCG CCCTCTACGA AAGCTGGTCG ATCCCGCTGG CGGTGATCCT GGTGGTGCCG
CTGGGCGTGC TCGGCGCACT GCACGGGGTG AGCCTGCGCG GCCTGCCCAA CGACATCTAC
TTCAAGGTCG GCCTGATCAC CATCATCGGC CTCTCGGCGA AGAACGCCAT CCTCATCATC
GAGGTAGCCA AGGACCATTA CCAGGAAGGC ATGAGCCTGC TGCAGGCGAC CCTGGAGGCC
GCGCGCCTGC GCCTGCGACC GATCGTCATG ACCTCGCTGG CGTTCGGTTT CGGCGTGGTC
CCGCTGGCGC TCTCCAGCGG CGCCGGTTCC GGCGCCCAGG TCGCCATCGG CACCGGGGTG
CTCGGCGGGA TCGTCACCGC CACGGTACTC GCGGTGTTCC TGGTACCGCT GTTCTTCCTG
GTGGTCGGGC GCCTGTTCCG GTTACGCAAG GCGCCGCGCA CCGGCACCTC GCCCCGGATC
CCGACGGAGC AAGCCTGA
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| Protein sequence | MARFFIDRPV FAWVISLLIV LAGVLAIRFL PVAQYPDIAP PVVNVSASYP GASAKVVEEA
VTAIIEREMN GAPGLLYTKA TSSTGQASLT LTFRQGVNAD LAAVEVQNRL KIVESRLPES
VRRDGIYVEK AADSIQLIVT LTSSSGRYDA MELGEIASSN VLQALRRVEG VGKVQTWGAE
YAMRIWPDPA KLTSMNLSAS DLVNAVRRHN ARLTVGDIGN LGVPDSAPIS ATVKVDDTLV
TPEQFGEIPL RIRADGGAIR LRDVARVEFG QSEYGFVSRV NQMTATGLAV KMAPGSNAVA
TAKRIRATLD ELSRYFPEGV SYNIPYDTSA FVEISIRKVV STLLEAMLLV FAVMYLFMQN
FRATLIPTLV VPVALLGTFT VMLGLGFSIN VLTMFGMVLA IGILVDDAII VVENVERLMA
QEGLSPHDTT VKAMRQISGA IVGITVVLVS VFVPMAFFSG AVGNIYRQFA VTLAVSIGFS
AFLALSLTPA LCATLLRPID ADHHEKRGFF GWFNRAFLRL TGRYRNAVAG ILARPVRWML
VYALVIGVVA LLFVRLPQAF LPEEDQGDFM IMVMQPEGTP MAETMANVAD VERYLAEHEP
VAYAYAVGGF SLYGDGTSSA MIFATLKDWS ERREASQHVG AIVERINQRF AGLPNRTVYA
MNSPPLPDLG STSGFDFRLQ DRGGVGYEAL VKARDQLLAR AAEDPRLANV MFAGQGEAPQ
IRLDIDRRKA ETLGVSMDEI NTTLAVMFGS DYIGDFMHGS QVRKVVVQAD GAKRLGIDDI
GRLHVRNEQG EMVPLATFAK AAWTLGPPQL TRYNGYPSFN LEGQAAPGYS SGEAMQAMEE
LMQGLPEGIA HEWSGQSFEE RLSGAQAPAL FALSVLIVFL ALAALYESWS IPLAVILVVP
LGVLGALHGV SLRGLPNDIY FKVGLITIIG LSAKNAILII EVAKDHYQEG MSLLQATLEA
ARLRLRPIVM TSLAFGFGVV PLALSSGAGS GAQVAIGTGV LGGIVTATVL AVFLVPLFFL
VVGRLFRLRK APRTGTSPRI PTEQA
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