Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PA14_36910 |
Symbol | ligD |
ID | 4385768 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas aeruginosa UCBPP-PA14 |
Kingdom | Bacteria |
Replicon accession | NC_008463 |
Strand | - |
Start bp | 3287787 |
End bp | 3290309 |
Gene Length | 2523 bp |
Protein Length | 840 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 639325538 |
Product | ATP-dependent DNA ligase |
Protein accession | YP_791107 |
Protein GI | 116050079 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG1793] ATP-dependent DNA ligase [COG3285] Predicted eukaryotic-type DNA primase |
TIGRFAM ID | [TIGR02776] DNA ligase D [TIGR02777] DNA ligase D, 3'-phosphoesterase domain [TIGR02778] DNA polymerase LigD, polymerase domain [TIGR02779] DNA polymerase LigD, ligase domain |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.0564843 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 53 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCCAGCA GCAAGCCGCT CGCCGAGTAC GCCCGCAAGC GCGATTTCCG CCAGACCCCG GAGCCCAGCG GCCGCAAGCC TCGCAAGGAC AGCACCGGTC TGCTCCGCTA TTGCGTCCAG AAGCACGACG CCAGCCGCCT GCACTACGAC TTCCGCCTGG AGCTGGATGG CACCTTGAAG AGCTGGGCGG TGCCCAAGGG GCCGTGCCTC GACCCGGCGG TGAAGCGGCT CGCGGTGCAG GTTGAGGACC ATCCGCTGGA CTATGCCGAT TTCGAAGGCA GCATCCCCCA GGGGCACTAC GGCGCCGGCG ATGTCATCGT CTGGGACCGA GGCGCCTGGA CGCCTCTGGA CGATCCGCGC GAGGGCCTGG AAAAGGGCCA TCTCAGCTTC GCCCTGGATG GCGAGAAACT CTCCGGGCGT TGGCACCTGA TCCGCACCAA CCTGCGCGGC AAGCAGCCCC AGTGGTTCCT GGTCAAGGCC AAGGACGGCG AGGCGCGCAG CCTGGATTGC TTCGACGTGC TGAAGGAGCG TCCCGACAGC GTGCTCAGCG AGCGTACGCT GCTGCCCCGC CATGGCGAAG CCGCCACGCC CGCGGCCAGG CCGGCGCGAC GCGGCAAGAG CGGGGGGAAG ACGCCGATGC CCGAATGGAT CGCCCCCGAG CTGGCCAGCC TGGTCGAGCA GCCTCCGCGA GGGGAGTGGG CCTACGAACT CAAGCTGGAC GGCTATCGGC TGATGAGCCG CATCGAAGAC GGCCACGTGC GCCTGCTGAC CCGCAACGGC CATGACTGGA CCGAACGCCT GCCGCACCTG GAGAAGGCAT TGGCCGGGCT CGGTCTGCAG CGCAGTTGGC TGGACGGCGA ACTGGTGGTC CTCGACGAGG AGGGTCGACC GGACTTCCAG GCCCTGCAGA ACGCCTTCGA GGAAGGTCGC GGCGAGAACA TCCTGTACGT CCTCTTCGAC CTGCCGTACC ACGAAGGCGA GGATCTGCGC GATGTCGCCC TGGAGGAGCG CCGCGCGCGC CTGGAGGCGC TGCTGGAAGG GCGCGACGAA GACCCGCTGC GGTTCTCCGC GACGCTCGCG GAAGACCCCC GCGACCTGCT GGCCAGCGCC TGCAAGCTCG GTCTCGAAGG CGTGATCGGC AAGCGTCTGG GCAGCGCCTA CCGTTCGCGC CGCAGCAACG ACTGGATCAA GCTGAAGTGC CAGTTGCGCC AGGAGTTCGT GATCGTCGGC TATACCGAGC CGAAGGGCTC TCGCCGGCAT ATCGGCGCCT TGCTGCTCGG CCTCTACAGC CCTGACGAGG AGCGCCGGCT GCGCTATGCC GGCAAGGTCG GCAGCGGCTT CACCGCGGCC AGCCTGAAGA AGGTCCGTGA GCGCCTGGAA CCCCTCGCGG TCCGCTCCAG CCCATTGGCG AAGGTGCCGC CGGCGCGCGA GACCGGGTCG GTGCAGTGGG TGCGCCCGCA ACAGCTGTGC GAGGTTTCCT ATGCGCAGAT GACCCGTGGC GGGATCATCC GCCAGGCAGT GTTCCACGGC TTGCGCGAAG ACAAGCCGGC GCGCGAGGTG ACCGGCGAGC GTCCCGCCGG CCCGCCGCCG CTGCGCGGCG CGCGCAAGGC CGGCGCCGGT GCGTCGCGGG CGGCCACCGC CGGCGTGCGC ATCAGCCATC CGCAGCGGCT GATCGACCCG TCGATCCAGG CCAGCAAGCT GGAACTCGCC GAGTTCCATG CGCGCTACGC CGACCTGCTC CTGCGCGACC TGCGCGAGCG CCCGGTGTCG CTGGTGCGCG GCCCCGACGG AATCGGCGGC GAACTGTTCT TCCAGAAGCA CGCGGCGCGC CTGAAGATCC CCGGCATCGT CCAGCTCGAC CCGGCGCTCG ATCCCGGTCA TCCGCCGCTG TTGCAGATCC GCAGCGCCGA GGCGCTGGTC GGCGCGGTGC AGATGGGCAG CATCGAATTC CATACCTGGA ACGCCAGCCT GGCCAACCTG GAGCGGCCCG ACCGTTTCGT CCTCGACCTC GACCCGGACC CGGCGCTGCC GTGGAAGCGC ATGCTCGAAG CGACCCAGCT GAGCCTGACG TTGCTCGACG AGCTGGGCCT GCGCGCCTTC CTCAAGACCA GCGGCGGCAA GGGCATGCAC CTGCTGGTGC CGCTGGAGCG CCGGCATGGC TGGGACGAGG TCAAGGATTT CGCCCAGGCC ATCTCCCAGC ACTTGGCGCG CCTGATGCCG GAGCGTTTCT CGGCGGTTTC CGGGCCGCGC AACCGGGTCG GCAAGATCTT CGTCGACTAC CTGCGCAACA GCCGCGGCGC CAGCACCGTG GCCGCCTACT CGGTGCGCGC CCGCGAAGGG TTGCCGGTGT CGGTACCGGT GTTCCGCGAG GAACTCGACT CGCTGCAGGG CGCCAACCAA TGGAACCTGC GCAGTCTGCC GCAGCGCCTC GACGAACTCG CCGGCGACGA TCCCTGGGCC GACTACGCCG GCACCCGCCA GCGCATCAGC GCGGCCATGC GGCGCCAGCT CGGGCGCGGC TGA
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Protein sequence | MPSSKPLAEY ARKRDFRQTP EPSGRKPRKD STGLLRYCVQ KHDASRLHYD FRLELDGTLK SWAVPKGPCL DPAVKRLAVQ VEDHPLDYAD FEGSIPQGHY GAGDVIVWDR GAWTPLDDPR EGLEKGHLSF ALDGEKLSGR WHLIRTNLRG KQPQWFLVKA KDGEARSLDC FDVLKERPDS VLSERTLLPR HGEAATPAAR PARRGKSGGK TPMPEWIAPE LASLVEQPPR GEWAYELKLD GYRLMSRIED GHVRLLTRNG HDWTERLPHL EKALAGLGLQ RSWLDGELVV LDEEGRPDFQ ALQNAFEEGR GENILYVLFD LPYHEGEDLR DVALEERRAR LEALLEGRDE DPLRFSATLA EDPRDLLASA CKLGLEGVIG KRLGSAYRSR RSNDWIKLKC QLRQEFVIVG YTEPKGSRRH IGALLLGLYS PDEERRLRYA GKVGSGFTAA SLKKVRERLE PLAVRSSPLA KVPPARETGS VQWVRPQQLC EVSYAQMTRG GIIRQAVFHG LREDKPAREV TGERPAGPPP LRGARKAGAG ASRAATAGVR ISHPQRLIDP SIQASKLELA EFHARYADLL LRDLRERPVS LVRGPDGIGG ELFFQKHAAR LKIPGIVQLD PALDPGHPPL LQIRSAEALV GAVQMGSIEF HTWNASLANL ERPDRFVLDL DPDPALPWKR MLEATQLSLT LLDELGLRAF LKTSGGKGMH LLVPLERRHG WDEVKDFAQA ISQHLARLMP ERFSAVSGPR NRVGKIFVDY LRNSRGASTV AAYSVRAREG LPVSVPVFRE ELDSLQGANQ WNLRSLPQRL DELAGDDPWA DYAGTRQRIS AAMRRQLGRG
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