| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PA14_32710 |
|---|
| Symbol | |
|---|
| ID | 4380552 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas aeruginosa UCBPP-PA14 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008463 |
|---|
| Strand | + |
|---|
| Start bp | 2840489 |
|---|
| End bp | 2841007 |
|---|
| Gene Length | 519 bp |
|---|
| Protein Length | 172 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 639325200 |
|---|
| Product | ECF subfamily RNA polymerase sigma-70 factor |
|---|
| Protein accession | YP_790769 |
|---|
| Protein GI | 116050412 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 0.230791 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 0.0000303722 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGTCCGCCC CGATCCTTCT CAGCGCCCAC CATCGCGCCA TGCATGCGCT GTACAGCGAG
CACCATGGCT GGTTGCAGAA CTGGTTGCGC GGCAAGCTGG GCTGCGCGGC GGACGCGGCG
GACCTGGCCC AGGACACCTT CCTGCGCATC CTGCTCAAGC GCGAACTGCG CGAGATCGGC
ATGCCGCGCG CGTTCCTGCG GACCATCGCC CGCGGCCTGG TGATCGACCA CTGGCGTCGC
GAGGAACTGC AGCGCGCCTA CCTCGAAAGC ATCGCCCACT TGCCCGAGGC ACAGGCGCCG
TCGCCCGAGG CGCGGGAACT GGTGCTGGAA CTGCTGGAGG AAATCTCGCG GATGCTCGAC
GGGCTCAAGC CGAAGGTCCG CACCGCCTTC CTCCTGGCCC AGTGCGAAGA CCTCAGCCAC
CGGCAGATCG CCGAACGCAT GGGGGTTTCC CAGCGTAGCG TCGAGCGCTA CGTGGCCGAG
GCGCTGTACC ACTGCTACCT GCTGCGCTAC GGCGAATGA
|
|---|
| Protein sequence | MSAPILLSAH HRAMHALYSE HHGWLQNWLR GKLGCAADAA DLAQDTFLRI LLKRELREIG
MPRAFLRTIA RGLVIDHWRR EELQRAYLES IAHLPEAQAP SPEARELVLE LLEEISRMLD
GLKPKVRTAF LLAQCEDLSH RQIAERMGVS QRSVERYVAE ALYHCYLLRY GE
|
|---|
| |