Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PA14_29400 |
Symbol | |
ID | 4380714 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas aeruginosa UCBPP-PA14 |
Kingdom | Bacteria |
Replicon accession | NC_008463 |
Strand | + |
Start bp | 2546202 |
End bp | 2550155 |
Gene Length | 3954 bp |
Protein Length | 1317 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 639324938 |
Product | hypothetical protein |
Protein accession | YP_790510 |
Protein GI | 116050670 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3209] Rhs family protein |
TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 65 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAGCGGCC TACCGGTTTC CCATGTCGGC GAGAAAGTCT CGGGAGGGGT TATCTCCACC GGCTCGCCCA CCGTGCACGT CGGCAGCAGC GCGGTCGGCC TGGCCGACCG GGTGTCCGCC TGCGTGCCGT TGGTGGGCAA GCCGGTCAAC CCGATGCTCG GCAGCAAGCT GCTGCCGGAA GAGGTCGATT TCGCCCTGGC GGCGCCGGAC ACCTTCACCT TCGCCCGTGG CTACCTGTCG AGCAACCCCC GTATCGGCCG GCTCGGCCGG GGCTGGTGGC TGCCGGGCGA GAGCATGCAC CTGGAACTGA GCGAAGACGC CTGCGTGCTG GTCGACGCCC AGGGCCGCCG GATCGGCTTT CCTGCGCTGG CTCCCGGCGC CCAGCATTAT TCCGGCAGCG AGGAGCTGTG GCTGCGCCGC GGCGGTTCGA GCGGCGGCGA AGCGCAGGCC TGGCGCGGGC GCTGGGCGGC GGTGCCGGCC GAACTGCAGA CGCAGGAGGG CTCCGTGCTG GTGCTGTCCG GCCACAGCTA CCTGCATTTC CAGCGTTGCC CCGACGGTAT CTGGCGCCTG CAGGCCAGCT TCGGCCGCGC CGGCTACCGC ACCGAGTTCC GCTGGAGCGG ACGTGGCCTG CTCACCGGCG TGCGCGACAG CGCCGGGCGC AGCTATGCGC TGGTCTACCA GCAAGCCTGC GAGCCGAGCG AGGGCGACGA CGGCCTGCGT CTGTTCGGCG TGATCCTGGC CAGCCACGAC GGACCGCCTC CGGACTACAT CGATCCGCAG AGCCCGGGGC TCGACTGGCT GGTGCGCTAC CAGTTCAGCG ACAGCGGCGA TCTGATCGCC GTGCGCGACC GTCTTGGCCA GGTGGTCCGG GTATTCGCCT GGCGCGAGCA CATGCTGGTC GCCCACGGCG AACCGGGCGG GCTGGAGGTT CGCTACGAGT GGGATGTCCA TGCTCCGCAC GGGCGGGTCG TGAAGCAGAT CGAGGCGGGC GGCCTGACCC GTACCTTCCG CTACCTGCGC GATGCCACCG AGGTCAGCGA CAGCCTCGGC CGCGTCGAAC GCTACGAGTT CGCCGGCGAG GGCGGGCAGC GGCGCTGGAC CGCGCTGGTC AGGGCCGACG GCAGCCGTAG CGAGTTCGAC TACGACCTGT TCGGCCGCCT GGTCGCCATG CGCGATCCGC TGGGACGGGA GACGCGGCGC CGGCGCGATG GCCAGGGGCG GATGCTCGAG GAGGAGTCGC CGGGCAAGGC GCGCTATCGC AAGCGCGTCG ACGAAGAGAC CGGGCTGCTG GTCGAGCTGG AGGACGCGAT GCAGCGCCGC TGGACCTTCG AGCGCGACGA ACGGGGCAAT GCGACGACGG TGCGCGGCCC GGCCGGCAGC ACCCGCTACG CCTACGAAGA CCCGCGCCTG CCCGACCGGC CGACGCGAAT CGTCGACCCG CGCGGCGGCG AGCGGCGCCT GGAGTGGAAC CGCTTCGGCC TGTTGGCCGC GTTGACCGAT TGTTCCGGCC AGGTCTGGCG TTACGACTAC GACAACGAAG GACGTTTGGT CGCCAGCAGC GACCCGCTGG GACAACTGAC CCGGCGCCGC TACGACCCGC TGGGGCAACT GATCGGCCTG GAATTGGCCG ACGGCAGCGC CCTGAGCTAT GAATACGACG CCCTTGGGCG GCAGATCCGT ATCGCCGATG CCAAGGGGCA CGCCACGCTG TTTTCCTGGG GGCACGGCGA TCTGCTGGCG CGGGTTTCCG ACGCCGGCGG CGGCGAATTG TCCTACCTGC ACGACGAAGC CGGCAGGCTG GTCGCCCTGA CCAACGAGAA CGGCGTCCAG GCGCAGTTCC GCTACGACCT GCTGGACCGT CTGGTGGAAG AGACCGGCTT CGACGGTCGT CGCCAACGCT ATCGCTACAA CGCCGCTGAC GAACTGATCG CCCGCGAGGA TGCCGACGGT CGCGAGACCA CCTATGCCTA CGACCGCGAC GGCCGCCTGG CGAGCATCCG GGTTCCCGCC ACCGAGCACG CACCGGCCCT GGTCGAGCGT TACCGCTGGT TGGCCGACGG CCGCCTGGCC AGCGCCGGCG GGGCGGATTG CGAGGTGCGC TACACGTACG ACGAGGTCGG TAACCTGCGC CTGGAAAGCC AGGTACATGC CGACGGTTGG GTCTACAGCG TCGAGCACAG CCACGACGCG CTAGGCGTGC GCCAGACCAG CCGCTACGGC GACGCGCCGC CGGTCGCCTG GCTGACCTAT GGCCCGGGTC ATCTGCACGG CGCGCTGGTC GGTGCGGTCG AGCTGGCCTT CGAGCGCGAT GCCCTGCACC GCGAGGTGCG TCGCGACGCC CGCCGCGACG GGCAGGATGA CGCGTTGTTC ACCCAGGAGC GCCAGCACGC GCCGCTGGGA CGCCTGCAGC GCAGCCGCCT GCGTCTGGCC GGCGGTTTCG ACTGGCAGCG CGGCTATCGC TACGACGGAC TTGGACAACT GGTCGGCATC GACGACAACC AGTATCCGTC GGTGCGCTAC GAATACGACC TCGGCGGTCG CCTGCTGGCC AGCCGGCGCG CTGGCGCGGC GGCCAGCACC TACCGCTACG ACGCCGCCGG CAACCGCCTG GAGGGCGTCG GCGAGTACGC GCGCGAGGAC GCTCGCCAGG CATTCGCCGA GAACGAACTG TACCGCTCCG GTTTCAGTCG CTCCGAGACG CGCGCGAGCC AGGCCGGCGA AGGCCCGGCG CGCTGGGCCG GCAACCGCGT GGAGAGGATC GCCGGCAACC GCTATCGCTT CGATGCGCTG GGCAACCTGG TCGAGCGTAT CGGCGCCGAC GGCGAGCGCC TGCGCCTGGC CTACGACGGC GCGCAGCGCC TGGTCCATCT GACGCGCGAT TACGCCGACG GCACGCGGCT GGAGGCGCGC TACCGCTACG ACGCGCTGTC GCGACGGATC GCCAAGGTGG TGCTGCGCGA CGGTGTCGAG CAGCAGGTGC GCTTCGGCTG GGACGGCGAT CGCCAATGCG CCGAAGCCTT TGCGCGGGAA CTGCGCACCA CCGTTCACGA ACCGGGCGGT TTCGTCCCGT TGCTGCGCCT GGAGCAGGCC TGCGAGCCCG ATCCCCCGGA GCTGCTGCAA CTGCGCCAGG CGTTCGCCGC CGAAGGCCAG CCGCTGCCGG CGCAATGCGT GCCGGCGCTG GGCGAGGCGC GGATCGCTTT CTTCCACACC GATCACCTCG GTACCCCCCT GCAGCTGAGC GACGAACGTG GCCAACTGCG TTGGCAGGGC GTTCCGGACG ACTGGCGGGC GGTAGCGCCG GAACGACAGC CGGGTGCGCA GCCGATCCGC TTCCAGGGGC AGTACCACGA TGAGGAAAGC GGCCTCTACT ACAACCGCTA CCGTTACTAC CTGCCGGAAG CCGGGCGCTA TGCCAGCCAG GACCCGCTCG GCCTGGGCGG TGGCCCCAAC CCCTATGCCT ACGCGCTGAA CGCGCCCACG CTGGCCTACG ATCCCACCGG CCTGATCATC CCGCTGGTGG TGATCGGCGC CTTCGCCGCC CGCGCCGCGA TCGGAGCGGC GCTGGGCGCC GGCATCGAGC TGGGGATGCA AACCGGCAAG CAGGTGCTGG GGCAGATGAA GGACAACTGG GACAGCGATC GCGACCTCAC CGATATCAAG TGGAAGTGCA TCGACATCAA CTGGAAACAC GTCGGCGCCT CGGCGGCCAT CGGCACCGTG GCGCCGGGCA TGCTCAGCAC CGGCAAGACC GTGGTGCAGT CCGCCAAGGC GATCAGGACC CTTTCCGGAC AGGCGGCCAA CACCGCCAAC CGCGCGGCCA AGCTGGCCGC GCGCAAGGCC GCCCATGCCG ATACCATCAA GAAGGCCGTG GCCACCCAGG CCGCCTGGCA GACGGGCAAG CAGATCGTCA AATGCCCGCT GAAGGACGAA GAAGAGGAGT GCCCGCCGCA ATGA
|
Protein sequence | MSGLPVSHVG EKVSGGVIST GSPTVHVGSS AVGLADRVSA CVPLVGKPVN PMLGSKLLPE EVDFALAAPD TFTFARGYLS SNPRIGRLGR GWWLPGESMH LELSEDACVL VDAQGRRIGF PALAPGAQHY SGSEELWLRR GGSSGGEAQA WRGRWAAVPA ELQTQEGSVL VLSGHSYLHF QRCPDGIWRL QASFGRAGYR TEFRWSGRGL LTGVRDSAGR SYALVYQQAC EPSEGDDGLR LFGVILASHD GPPPDYIDPQ SPGLDWLVRY QFSDSGDLIA VRDRLGQVVR VFAWREHMLV AHGEPGGLEV RYEWDVHAPH GRVVKQIEAG GLTRTFRYLR DATEVSDSLG RVERYEFAGE GGQRRWTALV RADGSRSEFD YDLFGRLVAM RDPLGRETRR RRDGQGRMLE EESPGKARYR KRVDEETGLL VELEDAMQRR WTFERDERGN ATTVRGPAGS TRYAYEDPRL PDRPTRIVDP RGGERRLEWN RFGLLAALTD CSGQVWRYDY DNEGRLVASS DPLGQLTRRR YDPLGQLIGL ELADGSALSY EYDALGRQIR IADAKGHATL FSWGHGDLLA RVSDAGGGEL SYLHDEAGRL VALTNENGVQ AQFRYDLLDR LVEETGFDGR RQRYRYNAAD ELIAREDADG RETTYAYDRD GRLASIRVPA TEHAPALVER YRWLADGRLA SAGGADCEVR YTYDEVGNLR LESQVHADGW VYSVEHSHDA LGVRQTSRYG DAPPVAWLTY GPGHLHGALV GAVELAFERD ALHREVRRDA RRDGQDDALF TQERQHAPLG RLQRSRLRLA GGFDWQRGYR YDGLGQLVGI DDNQYPSVRY EYDLGGRLLA SRRAGAAAST YRYDAAGNRL EGVGEYARED ARQAFAENEL YRSGFSRSET RASQAGEGPA RWAGNRVERI AGNRYRFDAL GNLVERIGAD GERLRLAYDG AQRLVHLTRD YADGTRLEAR YRYDALSRRI AKVVLRDGVE QQVRFGWDGD RQCAEAFARE LRTTVHEPGG FVPLLRLEQA CEPDPPELLQ LRQAFAAEGQ PLPAQCVPAL GEARIAFFHT DHLGTPLQLS DERGQLRWQG VPDDWRAVAP ERQPGAQPIR FQGQYHDEES GLYYNRYRYY LPEAGRYASQ DPLGLGGGPN PYAYALNAPT LAYDPTGLII PLVVIGAFAA RAAIGAALGA GIELGMQTGK QVLGQMKDNW DSDRDLTDIK WKCIDINWKH VGASAAIGTV APGMLSTGKT VVQSAKAIRT LSGQAANTAN RAAKLAARKA AHADTIKKAV ATQAAWQTGK QIVKCPLKDE EEECPPQ
|
| |