Gene PA14_15980 details

Gene Information

• Locus tag: PA14_15980
• Symbol: rimM
• ID: 4381630
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas aeruginosa UCBPP-PA14
• Kingdom: Bacteria
• Replicon accession: NC_008463
• Strand: +
• Start bp: 1361312
• End bp: 1361839
• Gene Length: 528 bp
• Protein Length: 175 aa
• Translation table: 11
• GC content: 65%
• IMG OID: 639323831
• Product: 16S rRNA-processing protein RimM
• Protein accession: YP_789419
• Protein GI: 116051742
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0806] RimM protein, required for 16S rRNA processing
• TIGRFAM ID: [TIGR02273] 16S rRNA processing protein RimM

Plasmid Coverage information

• Num covering plasmid clones: 22
• Plasmid unclonability p-value: 0.00452583
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: 45
• Fosmid unclonability p-value: 0.522546
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGCCGACAC CCGCCGACGA CCTGGTCGTG ATCGGCAAGA TCGTTTCGGT GTACGGCATC 
CGCGGTGAGG TGAAGGTGTA TTCCTTTACC GACCCGTTGG ACAACCTGCT GGACTATCGC 
CGCTGGACGC TCCGGCGCGA CGGCGAGATT CGGCAGGCCG AGCTGGTCAG GGGGCGCCTG 
CATGGCAAGG TCCTGGCCGC CAAGCTCAAG GGGCTCGACG ATCGCGAAGA GGCCCGCACC 
TTCACCGGTT ACGAGATCTG CATCCCGCGT AGCGAGTTGC CCTCTCTCGA GGAAGGTGAG 
TACTACTGGC ACCAGCTGGA AGGCCTGAAG GTGATCGACC AGGGCGGGCA GTTGCTCGGC 
GTGATCGACC ATCTGCTGGA AACCGGTGCC AACGATGTCA TGGTGGTCAA GCCCTGCGCG 
GGCAGCCTGG ACGACCGCGA GCGCCTGTTG CCCTACACCG GGCAATGCGT GCTGTCGATC 
GACCTGGCCG CTGGCGAGAT GCGGGTGGAC TGGGACGCGG ACTTCTGA 

 

Protein sequence

MPTPADDLVV IGKIVSVYGI RGEVKVYSFT DPLDNLLDYR RWTLRRDGEI RQAELVRGRL 
HGKVLAAKLK GLDDREEART FTGYEICIPR SELPSLEEGE YYWHQLEGLK VIDQGGQLLG 
VIDHLLETGA NDVMVVKPCA GSLDDRERLL PYTGQCVLSI DLAAGEMRVD WDADF