Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PA14_08760 |
Symbol | rpoB |
ID | 4381345 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas aeruginosa UCBPP-PA14 |
Kingdom | Bacteria |
Replicon accession | NC_008463 |
Strand | + |
Start bp | 746203 |
End bp | 750276 |
Gene Length | 4074 bp |
Protein Length | 1357 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 639323260 |
Product | DNA-directed RNA polymerase subunit beta |
Protein accession | YP_788849 |
Protein GI | 116052305 |
COG category | [K] Transcription |
COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 27 |
Fosmid unclonability p-value | 0.00338261 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGGCTTACT CATACACTGA GAAAAAACGT ATCCGCAAGG ACTTTAGCAA GTTGCCGGAC GTCATGGATG TGCCGTATTT GCTGGCCATC CAGCTGGATT CCTATCGCGA ATTCCTGCAG GCTGGCGCAA CCAAGGAGCA GTTCCGCGAT ATCGGTCTGC ACGCGGCCTT CAAGTCCGTT TTCCCGATTA TCAGCTATTC CGGCAATGCT GCCCTGGAAT ACGTCGGCTA CCGTCTGGGT GAGCCGGCAT TCGATGTCAA GGAGTGCGTG CTGCGCGGCG TGACCTTCGC CGTACCGCTG CGCGTGAAAG TTCGCCTGAT CATCTTCGAC CGCGAGTCGT CGAACAAGGC GATCAAGGAC ATCAAGGAAC AAGAAGTCTA CATGGGGGAA ATCCCCCTGA TGACCGAGAA CGGTACCTTC ATCATCAACG GTACCGAGCG TGTCATCGTC TCCCAGCTGC ACCGTTCCCC GGGCGTGTTC TTCGACCACG ACCGTGGCAA GACCCACAGC TCCGGCAAGC TGCTGTACTC CGCGCGGATC ATTCCTTACC GCGGTTCCTG GCTGGACTTC GAGTTCGATC CGAAGGACTG CGTGTTCGTC CGTATCGACC GTCGCCGCAA GCTGCCGGCC TCGGTACTGC TGCGCGCGCT CGGCTACAGC ACCGAAGAGA TCCTCAACGC CTTCTACGCG ACCAACGTCT TCCACATCAA GGGCGAGACC CTGAACCTGG AACTGGTCCC GCAGCGTCTG CGCGGTGAAG TCGCGAGCAT CGACATCAAG GATGGCAGCG GCAAGGTGAT CGTGGAGCAG GGGCGTCGTA TCACTGCCCG CCACATCAAC CAGCTGGAAA AGGCTGGCGT GAGCCAGCTG GAAGTGCCGT TCGACTACCT GATCGGCCGT ACCATCGCCA AGGCGATCGT GCATCCGGCT ACCGGCGAGA TCATCGCCGA GTGCAACACC GAGCTGACCC TCGACCTCCT GGCCAAGGTG GCCAAGGCCC AGGTCGTGCG CATCGAGACT CTGTACACCA ACGACATCGA CTGCGGTCCG TTCATCTCCG ACACCCTGAA GATCGACAAC ACCAGCAACC AGCTGGAAGC CCTGGTCGAA ATCTACCGGA TGATGCGTCC GGGCGAGCCG CCGACCAAGG AAGCTGCCGA GACCCTGTTC GGCAACCTGT TCTTCAGCGC CGAGCGTTAC GACCTGTCGG CCGTGGGCCG GATGAAGTTC AACCGCCGTA TCGGTCGTAC CGAGATCGAA GGTCCGGGCG TCCTGAGCAA GGAAGACATC ATCGATGTGC TCAAGACCCT CGTCGACATC CGTAACGGCA AGGGCATCGT CGATGACATC GACCACCTGG GCAACCGTCG CGTCCGTTGC GTCGGCGAAA TGGCCGAGAA CCAGTTCCGC GTGGGCCTGG TGCGCGTCGA GCGCGCGGTC AAGGAACGCC TGTCCATGGC CGAAAGCGAA GGCCTGATGC CGCAGGACCT GATCAACGCC AAGCCGGTGG CTGCCGCGAT CAAGGAGTTC TTCGGTTCGA GCCAGCTGTC GCAGTTCATG GGCCAGAACA ACCCGCTTTC CGAGATCACC CACAAGCGCC GCGTCTCCGC GCTCGGCCCG GGCGGTCTGA CCCGTGAGCG TGCGGGCTTC GAGGTTCGTG ACGTACACCC GACCCACTAC GGCCGCGTGT GCCCGATCGA AACCCCTGAA GGTCCGAACA TCGGTCTGAT CAACTCCCTG GCGACCTACG CCCGCACCAA CAAGTACGGC TTCCTCGAGA GCCCGTACCG CGTAGTCAAG GACAGCCTGG TAACCGACGA GATCGTGTTC CTGTCGGCGA TCGAAGAAGC CGACCACGTC ATTGCCCAGG CTTCGGCGAC CCTCAACGAG AAGGGTCAAC TGGTGGACGA ACTGGTGGCC GTGCGTCACC TGAACGAATT CACCGTGAAG GCGCCGGAAG ACGTGACCCT GATGGACGTG TCGCCGAAGC AGGTCGTTTC CGTAGCTGCC TCGCTGATTC CGTTCCTCGA GCACGATGAC GCCAACCGCG CACTCATGGG CTCGAACATG CAGCGTCAGG CCGTGCCGAC CCTGCGTGCC GACAAGCCGC TGGTGGGTAC CGGCATGGAG CGCAACGTGG CGCGCGACTC CGGCGTCTGC GTCGTGGCTC GCCGTGGTGG TGTGATCGAC TCGGTCGATG CCAGCCGTGT CGTGGTTCGC GTGGCGGATG ACGAGGTCGA GACCGGCGAA GCGGGTGTCG ACATCTACAA CCTGACCAAG TACACCCGTT CCAACCAGAA CACCTGCATC AACCAGCGTC CGCTGGTGAG CAAGGGTGAC GTGGTTGCGC GCGGCGACAT CCTGGCCGAC GGTCCGTCCA CCGACATGGG CGAACTGGCC CTGGGCCAGA ACATGCGCGT AGCGTTCATG CCCTGGAACG GCTTCAACTT CGAAGACTCC ATCTGCCTGT CCGAGCGCGT GGTCCAGGAA GATCGTTTCA CCACGATCCA CATCCAGGAA CTGACCTGCG TCGCTCGTGA CACCAAGCTC GGCCCAGAGG AAATCACCGC GGACATCCCG AACGTGGGCG AGGCCGCGCT GAACAAGCTG GACGAAGCCG GTATCGTCTA CGTCGGCGCC GAAGTGCAGG CCGGCGACAT CCTGGTCGGC AAGGTCACTC CGAAAGGCGA GACCCAGCTG ACTCCGGAAG AGAAGCTGCT GCGCGCGATC TTCGGTGAGA AGGCGTCCGA CGTGAAGGAC ACCTCCCTGC GTGTGCCGAC CGGCACCAAG GGTACCGTCA TCGACGTTCA GGTCTTCACC CGCGACGGCG TCGAGCGCGA CTCCCGCGCT CTGTCCATCG AGAAGATGCA ACTCGACCAG ATCCGCAAGG ACCTGAACGA AGAGTTCCGC ATCGTCGAAG GCGCGACCTT CGAGCGTCTG CGTGCCGCCC TGGTCGGTGC CAAGGCTGAA GGTGGCCCGG CGCTGAAGAA GGGTACGGAG ATCACCGACG ACTACCTCGA CGGCCTCGAG CGCGGCCAGT GGTTCAAGCT GCGCATGGCC GACGACGCCC TGAACGAACA GCTGGAGAAG GCCCAGGCCT ACATCAGCGA TCGTCGCCAG CTCCTGGACG ACAAGTTCGA GGACAAGAAG CGCAAGCTGC AGCAGGGCGA CGACTTGGCT CCGGGCGTGC TGAAGATCGT CAAGGTCTAC CTGGCGATCA AGCGTCGCAT CCAGCCGGGC GACAAGATGG CCGGCCGTCA CGGTAACAAG GGTGTGGTCT CGGTGATCAT GCCGGTGGAA GACATGCCGC ACGATGCCAA CGGCACCCCG GTCGACATCG TCCTCAACCC GTTGGGCGTA CCGTCGCGTA TGAACGTCGG CCAGATCCTC GAAACCCACC TGGGCCTCGC GGCCAAGGGG CTGGGCGAGA AGATCAACCG CATGCTCGAA GAGCAGCGCA AGGTCGCCGA ACTGCGTAAG TTCCTGCACG AGATCTACAA CGAGATCGGC GGTCGCGAGG AAAACCTCGA CGAGCTGGGC GACAACGAGA TCCTCGCGCT GGCCAAGAAC CTGCGCGGTG GCGTACCGAT GGCGACCCCG GTGTTCGATG GCGCCAAGGA ACGCGAGATC AAGGCCATGC TGAAGCTGGC CGACCTGCCG GAAAGCGGCC AGATGCGTCT GTTCGACGGC CGTACCGGCA ACCAGTTCGA GCGTCCGACC ACCGTCGGCT ACATGTACAT GCTCAAGCTG AACCACCTGG TGGACGACAA GATGCACGCC CGTTCCACCG GCTCGTACAG CCTGGTTACC CAGCAGCCGC TGGGTGGTAA GGCACAGTTC GGTGGTCAGC GCTTCGGTGA GATGGAGGTG TGGGCGCTGG AAGCCTATGG CGCGGCGTAC ACCCTGCAGG AAATGCTGAC GGTCAAGTCG GACGACGTGA ACGGCCGGAC CAAGATGTAC AAGAACATCG TGGACGGCGA TCACCGCATG GAGGCCGGCA TGCCCGAGTC CTTCAACGTT CTGATCAAAG AGATCCGTTC GCTCGGCATC GACATCGAAC TGGAAACCGA ATAA
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Protein sequence | MAYSYTEKKR IRKDFSKLPD VMDVPYLLAI QLDSYREFLQ AGATKEQFRD IGLHAAFKSV FPIISYSGNA ALEYVGYRLG EPAFDVKECV LRGVTFAVPL RVKVRLIIFD RESSNKAIKD IKEQEVYMGE IPLMTENGTF IINGTERVIV SQLHRSPGVF FDHDRGKTHS SGKLLYSARI IPYRGSWLDF EFDPKDCVFV RIDRRRKLPA SVLLRALGYS TEEILNAFYA TNVFHIKGET LNLELVPQRL RGEVASIDIK DGSGKVIVEQ GRRITARHIN QLEKAGVSQL EVPFDYLIGR TIAKAIVHPA TGEIIAECNT ELTLDLLAKV AKAQVVRIET LYTNDIDCGP FISDTLKIDN TSNQLEALVE IYRMMRPGEP PTKEAAETLF GNLFFSAERY DLSAVGRMKF NRRIGRTEIE GPGVLSKEDI IDVLKTLVDI RNGKGIVDDI DHLGNRRVRC VGEMAENQFR VGLVRVERAV KERLSMAESE GLMPQDLINA KPVAAAIKEF FGSSQLSQFM GQNNPLSEIT HKRRVSALGP GGLTRERAGF EVRDVHPTHY GRVCPIETPE GPNIGLINSL ATYARTNKYG FLESPYRVVK DSLVTDEIVF LSAIEEADHV IAQASATLNE KGQLVDELVA VRHLNEFTVK APEDVTLMDV SPKQVVSVAA SLIPFLEHDD ANRALMGSNM QRQAVPTLRA DKPLVGTGME RNVARDSGVC VVARRGGVID SVDASRVVVR VADDEVETGE AGVDIYNLTK YTRSNQNTCI NQRPLVSKGD VVARGDILAD GPSTDMGELA LGQNMRVAFM PWNGFNFEDS ICLSERVVQE DRFTTIHIQE LTCVARDTKL GPEEITADIP NVGEAALNKL DEAGIVYVGA EVQAGDILVG KVTPKGETQL TPEEKLLRAI FGEKASDVKD TSLRVPTGTK GTVIDVQVFT RDGVERDSRA LSIEKMQLDQ IRKDLNEEFR IVEGATFERL RAALVGAKAE GGPALKKGTE ITDDYLDGLE RGQWFKLRMA DDALNEQLEK AQAYISDRRQ LLDDKFEDKK RKLQQGDDLA PGVLKIVKVY LAIKRRIQPG DKMAGRHGNK GVVSVIMPVE DMPHDANGTP VDIVLNPLGV PSRMNVGQIL ETHLGLAAKG LGEKINRMLE EQRKVAELRK FLHEIYNEIG GREENLDELG DNEILALAKN LRGGVPMATP VFDGAKEREI KAMLKLADLP ESGQMRLFDG RTGNQFERPT TVGYMYMLKL NHLVDDKMHA RSTGSYSLVT QQPLGGKAQF GGQRFGEMEV WALEAYGAAY TLQEMLTVKS DDVNGRTKMY KNIVDGDHRM EAGMPESFNV LIKEIRSLGI DIELETE
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