| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PA14_07520 |
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| Symbol | rpoD |
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| ID | 4384223 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas aeruginosa UCBPP-PA14 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008463 |
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| Strand | - |
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| Start bp | 647191 |
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| End bp | 649044 |
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| Gene Length | 1854 bp |
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| Protein Length | 617 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 639323151 |
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| Product | RNA polymerase sigma factor RpoD |
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| Protein accession | YP_788749 |
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| Protein GI | 116054304 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.0627024 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 42 |
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| Fosmid unclonability p-value | 0.302038 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCGGAA AAGCGCAACA GCAATCTCGT CTGAAAGAGT TGATCGCCCG AGGCCGTGAG
CAGGGATACC TGACTTACGC GGAGGTCAAC GACCACCTGC CGGAGGATAT TTCCGATCCG
GAACAGGTGG AAGACATCAT CCGCATGATC AACGACATGG GGATCAACGT ATTCGAGACA
GCCCCGGATG CGGATGCCCT GTTGCTGGCC GAGGCGGATA CCGACGAAGC CGCAGCGGAA
GAAGCCGCAG CGGCCCTGGC CGCGGTGGAA AGCGACATCG GTCGCACCAC CGACCCGGTG
CGCATGTACA TGCGTGAAAT GGGTACCGTG GAACTGCTGA CCCGCGAAGG CGAGATCGAA
ATCGCCAAGC GCATCGAGGA AGGCATCCGC GAAGTGATGA GCGCCATCGC CCAGTTCCCG
GGCACGGTGG ACAGCATCCT GGCCGACTAC AATCGCATCG TCGCCGAAGG CGGTCGCCTC
TCCGACGTCC TCAGCGGCTA TATCGATCCC GATGACGGCA GCCTGCCCGC CGAAGAGGTG
GAGCCGGTCA ACCTGAAGGA CGATTCCGCC GACTCGAAAG AGAAGGACGA CGAGGAAGAA
GAAAGCGACG ACAGCAGCGA CAGCGACGAC GAAGGCGACG GCGGTCCGGA TCCGGAAGAA
GCCCGCCTGC GTTTCACCGC GGTCTCCGAG CAGCTCGACA AGGCCAAGAA GGCCCTGAAG
AAGCACGGTC GCGGCAGCAA GCAGGCCACC GCCGAACTCA CCGGCTTGGC CGAGCTGTTC
ATGCCGATCA AGCTGGTGCC CAAGCAGTTC GACGCCCTGG TCGCCCGCGT GCGCTCCGCC
CTGGAAGGCG TACGCGCCCA GGAACGCGCC ATCATGCAAC TCTGCGTGCG TGACGCGCGC
ATGCCGCGTG CCGACTTCCT GCGCCTGTTC CCGAACCACG AGACCGACGA GAAGTGGGTC
GACAGCGTCC TGAAGAGCAA GCCGAAGTAC GCCGAGGCCA TCGAGCGCCT GCGCGACGAC
ATCCTGCGCA ACCAGCAGAA GCTGGCGGCC CTGGAAAGCG AGGTCGAGCT GACCGTCGCC
GAGATCAAGG AAATCAACCG CGCGATGTCG ATCGGCGAAG CCAAGGCTCG CCGGGCGAAG
AAGGAAATGG TCGAGGCCAA CCTGCGCCTG GTGATTTCCA TCGCCAAGAA GTACACCAAC
CGCGGCCTGC AATTCCTCGA CCTGATCCAG GAAGGCAACA TCGGCCTGAT GAAGGCGGTG
GACAAGTTCG AATACCGTCG TGGCTACAAA TTCTCTACCT ACGCCACCTG GTGGATTCGC
CAGGCGATCA CCCGTTCGAT CGCCGACCAG GCACGCACCA TCCGCATCCC GGTGCACATG
ATCGAGACGA TCAACAAGCT CAACCGCATC TCCCGCCAGA TGCTCCAGGA AATGGGTCGC
GAGCCCACCC CGGAAGAGCT TGGCGAGCGC ATGGACATGC CTGAGGACAA GATCCGCAAG
GTACTGAAGA TCGCCAAAGA GCCGATCTCC ATGGAAACCC CGATCGGTGA CGACGAAGAT
TCGCACCTGG GCGATTTCAT CGAGGACTCC ACCATGCAGT CGCCGATCGA GATGGCGACC
AGCGAGAGCC TCAAGGAATC CACCCGCGAA GTCCTCGCCG GCCTCACTGC CCGGGAAGCC
AAGGTGCTGC GCATGCGCTT CGGCATCGAC ATGAACACCG ACCACACCCT CGAGGAAGTC
GGCAAGCAGT TCGATGTGAC CCGCGAGCGG ATCCGCCAGA TCGAAGCCAA GGCGTTGCGC
AAGCTGCGCC ATCCGTCGCG AAGCGAGCAC CTGCGCTCCT TCCTCGACGA GTGA
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| Protein sequence | MSGKAQQQSR LKELIARGRE QGYLTYAEVN DHLPEDISDP EQVEDIIRMI NDMGINVFET
APDADALLLA EADTDEAAAE EAAAALAAVE SDIGRTTDPV RMYMREMGTV ELLTREGEIE
IAKRIEEGIR EVMSAIAQFP GTVDSILADY NRIVAEGGRL SDVLSGYIDP DDGSLPAEEV
EPVNLKDDSA DSKEKDDEEE ESDDSSDSDD EGDGGPDPEE ARLRFTAVSE QLDKAKKALK
KHGRGSKQAT AELTGLAELF MPIKLVPKQF DALVARVRSA LEGVRAQERA IMQLCVRDAR
MPRADFLRLF PNHETDEKWV DSVLKSKPKY AEAIERLRDD ILRNQQKLAA LESEVELTVA
EIKEINRAMS IGEAKARRAK KEMVEANLRL VISIAKKYTN RGLQFLDLIQ EGNIGLMKAV
DKFEYRRGYK FSTYATWWIR QAITRSIADQ ARTIRIPVHM IETINKLNRI SRQMLQEMGR
EPTPEELGER MDMPEDKIRK VLKIAKEPIS METPIGDDED SHLGDFIEDS TMQSPIEMAT
SESLKESTRE VLAGLTAREA KVLRMRFGID MNTDHTLEEV GKQFDVTRER IRQIEAKALR
KLRHPSRSEH LRSFLDE
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