| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PA14_06950 |
|---|
| Symbol | |
|---|
| ID | 4383900 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas aeruginosa UCBPP-PA14 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008463 |
|---|
| Strand | + |
|---|
| Start bp | 601418 |
|---|
| End bp | 602908 |
|---|
| Gene Length | 1491 bp |
|---|
| Protein Length | 496 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 639323105 |
|---|
| Product | LuxR family transcriptional regulator |
|---|
| Protein accession | YP_788704 |
|---|
| Protein GI | 116054260 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 0.490761 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 65 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACGACC AGGTACTGCG TACCCAGACC GACCGCCGCC AGTTGCAGCA GATCATCGCC
GGTCTTACCG AAGGGGTGAT CCTGATCGAG CCGGACCAGC GCATCCTCTG GGCCAACGAG
GCGGCCCTGG CGATGCACGG CGTCGATTCG CTGGAAGGCC TGGGCGCCGA TACCGGCGAG
TATCGCGAGC GCTTTCGCCT GCGCTACCGC AACAATCATC CGCTGCAGGA GGGCCAGTAC
CCGGCCGAGC GCCTGGTGGC TGGCGAGTGC TTCAGCGACG TGGTGGTGGA AGTGTTTCCC
GCCGCCGACG AGGACACCCG CTGGGTGCAC CGCGTGCGCG GGTTGGTGCT GACCACCCCC
GAGGACAAGC CAGACTGCCT GGTGCTGATC CTCCACGACG CCACCGAGTG GGCCAGCGCC
GAGCAGCGCT TCGAGAAGAC CTTCAATGCC AACCCGGCGC CGGCGGTGAT CTGCCGGCTC
AGCGACTACC GCTACGTGAA GGTCAATGTC GGTTTCCTGG AAATGACCGG CTATGCCCGC
GACCAGGTGA TCGGCCGTTC GGTGTACGAG CTGGACGTAC TCGACCAGGC CGAGCGCCGC
GAACTGGCGG TGGAGCGTCT GGGCGCCGGC GAGACCATCC CGCAGATGGA GGCGAGCCTG
CGGGTGGCGG AGGGCGGACG CAAGTGCGTG GTGGTCGCCG GGCAGCCGAT AGAGGTCGGC
GAGGAGGCCT GCATGCTCTT CACCTTCACC GATCTCGAAC CGCGGAAGAA GGCCGAGGAG
GCCCTGCGCA AGAGCGAGGA GCGCTTCGCC AAGGCCTTCC GCATGGCACC GGTGCCGAGC
CTGGTGCTGT GCGGCGACGA CCTGCAGGTG CTGGACATCA ACCAGGCCTT CAGCGAAACC
TTCGGCTACC AGGCCGAGGA ACTGCTCGGC GAGTCCACCG TCGCCTGCGG GCTGTGGCAG
GACGGCGGCG CCGAGCGCCT GGGCGAGCTG CTGGCGCAGA GCGGCAGCGT GCGCAACGTC
CAGCTGCGCC TGCAGCACAA GGATCGCAAC GGCCTGGACT GCCTGGTCTC GGCCGAGGCG
GTGAGCCTCA ACGAGCAGGA CTGCGTGCTG GTGGCCTTGC TGGACATCAG CGACCGGCGG
CGCACCGAAA TGGAGCTGGT GCACGCCATC GAGACGGTGA TGCAGGACGC TTCCTGGTTC
AGCCGCACCC TGATCGAAAA GCTCGCCAAC GTGCGCCGCG CCAACGCGCC GGGCACCGGC
GCCGAACTGG CCGACCTGAC TGCGCGCGAG CGCGAGGTGT TCGACCTCAT CTGCCAGGGC
CTGGCGGACA AGGAGATCGC CAAGGAACTG GGCCTGGCGC CGAACACCGT GCGCAACCAC
GTGGCGACCA TCTACGCCAA GCTCGATGTC CACAGCCGTG GCGAGGCCAT CGTCTGGGCA
CGCGAACGCG GATTCGCGCC GGAGCCGCGC AACGGCAACG GGCGCAAATA A
|
|---|
| Protein sequence | MNDQVLRTQT DRRQLQQIIA GLTEGVILIE PDQRILWANE AALAMHGVDS LEGLGADTGE
YRERFRLRYR NNHPLQEGQY PAERLVAGEC FSDVVVEVFP AADEDTRWVH RVRGLVLTTP
EDKPDCLVLI LHDATEWASA EQRFEKTFNA NPAPAVICRL SDYRYVKVNV GFLEMTGYAR
DQVIGRSVYE LDVLDQAERR ELAVERLGAG ETIPQMEASL RVAEGGRKCV VVAGQPIEVG
EEACMLFTFT DLEPRKKAEE ALRKSEERFA KAFRMAPVPS LVLCGDDLQV LDINQAFSET
FGYQAEELLG ESTVACGLWQ DGGAERLGEL LAQSGSVRNV QLRLQHKDRN GLDCLVSAEA
VSLNEQDCVL VALLDISDRR RTEMELVHAI ETVMQDASWF SRTLIEKLAN VRRANAPGTG
AELADLTARE REVFDLICQG LADKEIAKEL GLAPNTVRNH VATIYAKLDV HSRGEAIVWA
RERGFAPEPR NGNGRK
|
|---|
| |