| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PA14_03040 |
|---|
| Symbol | |
|---|
| ID | 4383657 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas aeruginosa UCBPP-PA14 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008463 |
|---|
| Strand | - |
|---|
| Start bp | 267696 |
|---|
| End bp | 269201 |
|---|
| Gene Length | 1506 bp |
|---|
| Protein Length | 501 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 639322796 |
|---|
| Product | putative MFS transporter |
|---|
| Protein accession | YP_788397 |
|---|
| Protein GI | 116053959 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 0.479989 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.0000743098 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | TTGTCCGATC TCGCCCAGAA CCCGCCCGCC GTCCGTACCG TCCTCGCCGG CCTGATGCTG
TCGATCTTCC TCAGCGCCCT CGACCAGACC ATCGTCGCCG TCTCCCTGCC GGCGATCTCG
GCCGACTTCG CCGACCTCGA CCTGCTGGCC TGGGTGATCT CGGCCTACAT GGTGGCGATG
ACCGTATCGA TGCCGATCTA CGGCAAGCTC GGCGACCTCT ACGGCCGCCG CCGTCTGATG
CTCTTCGCCA TCGTCGTGTT CACCGCCGCC TCGCTGCTTT GCGGGCTCGC GCAGAGCATG
GGCCAACTGG TGCTGGCGCG AGTGCTGCAA GGGGTCGGCG CGGGCGGGCT GATGGCGGTG
AGCCAGGCGA TCATCGGCGA CATCGTCCCG CCGCGCGAGC GCGGCCGCTA CCAGGGCTAC
TTCAGCAGCA TGTACGCCAT CGCCAGCGTC GCCGGCCCGG TGCTCGGCGG CCTGCTCACC
GAGTACCTGT CGTGGCGCTG GGTGTTCTGG ATCAACCTGC CGATCGGCCT TCTCGCGCTG
GCCATCTCGC GGCGGACCCT GGTCGGCCTG CCGGTGCCGC GCCGGCAACC GGTGATCGAC
TACCTGGGCA TCGTGCTGAT GGTGGTGGGT CTCACCGCGC TGCTCCTGGC CATCACCCAG
ATCGGCCAGG GCGCAGCCTG GAGCGACCCG GCGCTGCTCG GCCTGTTCGC CCTGGCGGCG
CTCGCCCTGC TGCTGTTCGT CGCCCAGGAG CGGCGCTTCC GCGAACCGCT GGTGCCGATG
CAACTGTTCG CCGTCCGCGC CGCCACCCTC AGTTGGCTGG TTGCGTTCTT CGCCAGCTTC
CAGGCCATCT CGCTGACCGT GCTGGTGCCG CTGCGCTACC AGAGCGTTAC CGGCGCCGGC
GCCGACAGCG CCGCGCTGCA TTTGCTGCCG CTGGTCATGG GCCTGCCGCT GGGCGCGTAC
TGCTGCGGGC GGCTGACCGC CAGCCTGGGA CGCTACAAGC CGCTGATCCT GCTCGGCGCC
GTCCTGTTGC CCTGCGGCAT CGCCGGCCTG GCCCTGGTCC CGGTCGGCGA CCACTGGCTG
TCCGGGCTGT GCATGCTGCT CACCGGGATC GCCATCGGTA CCCAGTTCCC GACCAGCCTG
GTGGCCGCGC AGAACGCCGT GGAGCAACGC CACATCGGCG TCGCCACCAG CAACGCGACG
CTGTTCCGCT CCCTCGGCGG GGCGGTCGGG GTGGCGCTGA TGTCAGCGAT CCTGCTGGCC
CTGCTCAAGC ACCTGCGGAT CGGCGGCGGG CTCGACCAGG GCTTTTCCGA GAGCGCCCTG
CTGAGCAGCC TGGACGCCGC CAGCGGGCCG GCCCGGGTGA TCCTCCAGCA TGTCCTCGCG
GATGCCTTCA AGGTGCTCTT CCTGGTCAAC GCGGCGGTGG CGCTGCTCGG CCTGGCGGTG
GCCTCGGCAC TACCCGACAT GACCCTGCGC GGCCGCGGCG CGACGCAACC GACGGCAGGC
GAGTGA
|
|---|
| Protein sequence | MSDLAQNPPA VRTVLAGLML SIFLSALDQT IVAVSLPAIS ADFADLDLLA WVISAYMVAM
TVSMPIYGKL GDLYGRRRLM LFAIVVFTAA SLLCGLAQSM GQLVLARVLQ GVGAGGLMAV
SQAIIGDIVP PRERGRYQGY FSSMYAIASV AGPVLGGLLT EYLSWRWVFW INLPIGLLAL
AISRRTLVGL PVPRRQPVID YLGIVLMVVG LTALLLAITQ IGQGAAWSDP ALLGLFALAA
LALLLFVAQE RRFREPLVPM QLFAVRAATL SWLVAFFASF QAISLTVLVP LRYQSVTGAG
ADSAALHLLP LVMGLPLGAY CCGRLTASLG RYKPLILLGA VLLPCGIAGL ALVPVGDHWL
SGLCMLLTGI AIGTQFPTSL VAAQNAVEQR HIGVATSNAT LFRSLGGAVG VALMSAILLA
LLKHLRIGGG LDQGFSESAL LSSLDAASGP ARVILQHVLA DAFKVLFLVN AAVALLGLAV
ASALPDMTLR GRGATQPTAG E
|
|---|
| |