Gene P9515_17711 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagP9515_17711 
Symbolrnd 
ID4719894 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameProchlorococcus marinus str. MIT 9515 
KingdomBacteria 
Replicon accessionNC_008817 
Strand+ 
Start bp1558918 
End bp1559559 
Gene Length642 bp 
Protein Length213 aa 
Translation table11 
GC content28% 
IMG OID640081467 
Productputative ribonuclease D 
Protein accessionYP_001012085 
Protein GI123967004 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0349] Ribonuclease D 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.606229 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAATAATA CTCAAAAAAA TGAAAAAATA ACTCTCTACA ATAATGACAT AACCCAAAAC 
TTATATAATA TCTATAAGGA TTCCTCTTAT TTAGCTGTAG ATACTGAGGC AATGGGATTA 
ATACATGGAA GAGATCGGCT ATGTTTAATT CAAATATCTA ATGAATTTCA TTTAACTTCA 
TGCATAAAGA TAGAACTTAA TAACTCAGAT TCACCCCACA TAAAAAAATT ATTTGAAGAT 
AATAAAATAA TGAAAATATT TCATTACGCA AGATTTGATG TGGCAGCTCT AAAATGTAAC 
TTAAACATCA ATACAAACAA TATTTTTTGT ACAAAAATAG CTAGTAAATT GGCTAGGACA 
TATACACATA AACATGGCTT AAAAGAGTTA ATCCATGAAT TAATAGGAAT AGAATTAGAT 
AAAAGTTCGC AAAGTAGTGA TTGGGGTAGT TGCGAGGATT TATCTGACAA ACAAATTGAT 
TATGCTGCGA ATGACGTTAA ATATCTGATA GAAGCAATGC GCAAATTAAG AATCATTCTT 
GAGAGAGAAG GAAGATATGA CTTGGCTCAG AAATGTTTTC AAACTATTCC GGTTCATTCT 
GAATTAGATA TATTAAAGTT TTCTAATATA TTTGAGCATT AA
 
Protein sequence
MNNTQKNEKI TLYNNDITQN LYNIYKDSSY LAVDTEAMGL IHGRDRLCLI QISNEFHLTS 
CIKIELNNSD SPHIKKLFED NKIMKIFHYA RFDVAALKCN LNINTNNIFC TKIASKLART 
YTHKHGLKEL IHELIGIELD KSSQSSDWGS CEDLSDKQID YAANDVKYLI EAMRKLRIIL 
EREGRYDLAQ KCFQTIPVHS ELDILKFSNI FEH