| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | P9515_05601 |
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| Symbol | |
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| ID | 4719778 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Prochlorococcus marinus str. MIT 9515 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008817 |
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| Strand | - |
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| Start bp | 499452 |
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| End bp | 500645 |
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| Gene Length | 1194 bp |
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| Protein Length | 397 aa |
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| Translation table | 11 |
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| GC content | 35% |
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| IMG OID | 640080237 |
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| Product | RNA polymerase sigma factor RpoD |
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| Protein accession | YP_001010876 |
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| Protein GI | 123965795 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02997] RNA polymerase sigma factor, cyanobacterial RpoD-like family |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTGTCCAG TTGCAGCAAA ATCAAAAAAC TCTAGTCCTA GCTCTAAGAA AAAAACTAAT
AAAAAAATTA ATTCAAATTT AAAAACCGGT CAAGAAGAAG AGAAAATTAC TACAAATCTA
GATCCTGTTA AGAACTCGCA ACAAAATTCT TTGAAGGATA AAGAAATTAT CGAGAATAAT
GAAGAATTTA GTGGTTCTGA TGAAGAGGCT AAAGCTCTTG GGAACATAAA GCTAGGACCA
AAAGGTATTT ATACAGAGGA TTCTATAAGA GTTTATCTTC AGGAAATTGG AAGAATAAGA
CTATTAAGAC CCGATGAAGA AATTGAACTT GCTAGAAAAA TAGCTGATCT ACTCCAACTT
GAAGAGTTAG CTACACAATT CGAGTCTGAG AAGGGACATT TCCCTTCAGT CAGAGAATGG
GCTGAATTAA TAGACATGCC TCTTTCAAAA TTCAGAAGAA GACTTCTCTT AGGTAGAAGA
GCTAAAGAGA AGATGGTTCA ATCTAATTTA AGATTAGTTG TCTCCATAGC TAAGAAATAC
ATGAATAGAG GGTTATCTTT TCAAGATCTA ATTCAAGAAG GAAGCTTAGG TTTAATAAGG
GCTGCAGAAA AATTTGATCA TGAAAAAGGT TATAAATTCT CTACTTATGC AACTTGGTGG
ATTCGTCAAG CGATAACGAG AGCCATAGCA GATCAAAGTA GAACTATCAG ATTGCCTGTT
CACTTATATG AGACGATTTC TAGGATAAAA AAAACAACAA AAGTTCTTAG TCAAGAATTC
GGAAGAAAAC CTAGTGAAGA AGAGATAGCT GAGAGTATGG AGATGACAAT TGAGAAATTA
AGATTTATAG CTAAAAGTGC TCAGCTTCCA ATTTCTCTAG AGACTCCTAT TGGTAAAGAA
GAGGATTCAA GGCTTGGAGA CTTTATTGAG GCTGATATTG AGAACCCAGA ACAAGATGTA
TCCAAAACCT TATTGAGAGA AGATTTGGAG GGAGTTTTAG CGACTCTTAG TCCAAGAGAG
AGGGATGTCC TTAGATTGCG ATATGGAATT GATGACGGAA GAATGAAAAC TCTTGAAGAG
ATAGGGCAAA TATTTGATGT TACAAGGGAA AGAATTAGAC AGATAGAAGC AAAAGCACTG
AGAAAGCTAA GACATCCAAA CAGAAATGGG GTTTTAAAGG AATATATTAA ATAA
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| Protein sequence | MCPVAAKSKN SSPSSKKKTN KKINSNLKTG QEEEKITTNL DPVKNSQQNS LKDKEIIENN
EEFSGSDEEA KALGNIKLGP KGIYTEDSIR VYLQEIGRIR LLRPDEEIEL ARKIADLLQL
EELATQFESE KGHFPSVREW AELIDMPLSK FRRRLLLGRR AKEKMVQSNL RLVVSIAKKY
MNRGLSFQDL IQEGSLGLIR AAEKFDHEKG YKFSTYATWW IRQAITRAIA DQSRTIRLPV
HLYETISRIK KTTKVLSQEF GRKPSEEEIA ESMEMTIEKL RFIAKSAQLP ISLETPIGKE
EDSRLGDFIE ADIENPEQDV SKTLLREDLE GVLATLSPRE RDVLRLRYGI DDGRMKTLEE
IGQIFDVTRE RIRQIEAKAL RKLRHPNRNG VLKEYIK
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