| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | P9303_18251 |
|---|
| Symbol | |
|---|
| ID | 4776089 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Prochlorococcus marinus str. MIT 9303 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008820 |
|---|
| Strand | - |
|---|
| Start bp | 1585070 |
|---|
| End bp | 1585996 |
|---|
| Gene Length | 927 bp |
|---|
| Protein Length | 308 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 640087334 |
|---|
| Product | putative type II alternative sigma factor, sigma70 family |
|---|
| Protein accession | YP_001017832 |
|---|
| Protein GI | 124023525 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.0401007 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTGAGTT CTTTAAGTGC CTATCTTGGG GAGATCGGGC GCCACCAACT TCTGACACCT
GAACAGGAAC TCACAATGGG TCGGAAGGTT CAGGCCATGG TTGCGCTTAC TGACCGCTGC
CATCTTGCTG GTGGAGCAGG GCCCGAATGC GAATACTCAG ATGATCAGCG CCTCACCATT
CGTCGTGGTG AAAAAGCCAA GAATCAGATG ATCACTGCCA ATTTAAGACT TGTAGTGAAT
CTTGCTAAGC GATACCAGGG CAAGGGTCTT GATCTTCTCG ATCTGATTCA AGAAGGCACG
CTTGGACTTA CCAGAGCAGT GGAGAAATAT GACCCAACCC GTGGCCATAG ATTTTCGACC
TATGCCTATT GGTGGATTCG CCAGGGGCTT AACCGGGCAC TATCCACCCA GAGCAGGACG
ATACGAATTC CCGTCAATGT GAATGAGAAG CTAACCAAAT TAAGGGCAGC AAAGTCAAGA
CTGATGCAGA GCAACGGCTT GCCTCCCACT GCTGAGCAAT TGGTAAAAAC CATGCGACTG
CCGATGGCCG AAGTGGAAGA TCTGCTCGCT TGTGAATTAC GCAGTGTGAC AGTGAGCCTT
CAAGGAGTTG TGAAGTCAAA ATCCGACCCT TCAGAACTTG TGGATGTCCT TCCCAGCGAA
GAGATCCCTC CGATGGAGCG TGCCGAAATG GCGGAAAGGA CTGCATCGGT ATGGACTTTG
CTCAATCGTG CGAACCTCAC TCCTAAAGAA CGGATGGTGG TCACACTTCG TTTTGGACTC
GACGGATCTC ATGAATGGCG CACCCTCGCA GAAGTTGCAC GACATATGAG TTGCAGTCGC
GAATACTGCA GGCAGGTGGT ACAAAGGGCA CTGCGAAAAC TTCGCAAAAC AGGAATTCAG
AGTGGTTTGG TAGAAAGCAC CCTCTAA
|
|---|
| Protein sequence | MVSSLSAYLG EIGRHQLLTP EQELTMGRKV QAMVALTDRC HLAGGAGPEC EYSDDQRLTI
RRGEKAKNQM ITANLRLVVN LAKRYQGKGL DLLDLIQEGT LGLTRAVEKY DPTRGHRFST
YAYWWIRQGL NRALSTQSRT IRIPVNVNEK LTKLRAAKSR LMQSNGLPPT AEQLVKTMRL
PMAEVEDLLA CELRSVTVSL QGVVKSKSDP SELVDVLPSE EIPPMERAEM AERTASVWTL
LNRANLTPKE RMVVTLRFGL DGSHEWRTLA EVARHMSCSR EYCRQVVQRA LRKLRKTGIQ
SGLVESTL
|
|---|
| |