Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | P9303_16221 |
Symbol | secD |
ID | 4778613 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Prochlorococcus marinus str. MIT 9303 |
Kingdom | Bacteria |
Replicon accession | NC_008820 |
Strand | + |
Start bp | 1421058 |
End bp | 1422545 |
Gene Length | 1488 bp |
Protein Length | 495 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 640087131 |
Product | preprotein translocase subunit SecD |
Protein accession | YP_001017631 |
Protein GI | 124023324 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0342] Preprotein translocase subunit SecD |
TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family [TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.130277 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCACGTC AACAAGGCTG GTTTGCGCTC ATTCTTGCTC TTGCCATTGC GGCAGGTTCT GTCACTGCAA GCTTTCCGCT TGAGTTGGGC CTTGATCTTC GTGGTGGCAG TCAGCTCACT CTTGAAGTGC AGCCCGCTGG TGAGATCACT CGCGTGAAAG CCGAGCAGCT AGAGGCGGTC AAAGCTGTTT TGGATCGTCG CGTCAATGGC TTGGGTGTTG CCGAATCCAC ACTGCAGACC ATTGGTGACA ATCAACTGGT GTTGCAGCTT CCAGGAGAAC AGGATCCCAC CAGGGCTGCC AAGGTGCTTG GCGAGACGGC CTTACTTGAG TTTCGAGCTC AAAAACCTGG CACAGAAGAG GAGGTTCGCG GCCTTCAGCG CCTAAAACGA CAGGTAGAGA GCATTCTCAA GTCCAAGCAG GAGCGTGCGA TATCCGGAGA GTCTCCCTCT GATGATGAAC TCGATAAACA GCAACTTGTT GAAGCGCAGC AGGCCTTTGG TTTGCAAGGC AGTGTTGGCA GTGAGATCGA GCAGCTGGAA CAGTTAAATG AGAAAGTCAG CATCAAGATC GCTGAACTCT TCGAGCCCAC GTCCTTAACC GGGAAGGATC TAGTTACAGC TGGGCGTCAG CAACAGCAGA ACGTTCCTGA TAGCTGGGAG GTGACACTTA GCTTCAACCG AGAAGGCGGA GATCAATTCG CCGAGCTAAC ACAATCAATT GCTGGCACAG GTCGTCTACT TGGCATCGTT CTTGATGGAA GGTCGATCAG TGAAGCCAGC GTCGGGGAAC AGTTCAGAGC CGCTGGCATT ACTGGTGGTG CGGCCACGAT CAGCGGTAAT TTCAATGCTG AAGATGCCCG CGACCTGGAA GTTCAGTTGC GAGGTGGTTC GTTGCCATTA CCAGTAGAAA TTCTCGAGGT TCGAACCATT GGTCCCACCC TTGGTGCTGA AAACATTCGC CGCAGCTTGA TCGCAGCGCT CTCTGGTCTC GCCTTGGTGG CTGTTTTCAT GGTGGTGGCT TATCGCCTTG CGGGCTTGGT GGCGGTGTTG GCATTGAGTC TTTATGCCCT GTTCAATCTG GCTATGTATG CTCTGATTCC TGTCATCCTT ACCCTGCCTG GGATTGCTGG TTTCATCCTC AGTATTGGCA TGGCAGTGGA TGCCAATGTG CTGATCTTTG AGCGTGTCAA AGATGAATTG CGGCGTGGCA ACACCTTGAT TCGCTCGATC GAGACTGGAT TTTCCCAGGC TTTGTCGTCG ATCGTTGACG GCCATCTCAC CACTCTGATT AGTTGCGCAG CGCTCTTTTT TCTGGGTACG GGTTTGGTTA AAGGTTTTGC CGCCACCCTC GGCATCGGTG TTGTGCTCAG TTTGTTTACG GCCTTGAGCT GCACTCGCAC TCTGCTGCGT TTTTTGATGG GCTATCAGGC TTTGAGGCGA CCTACCAACT TTTTGCCTGC CAAACAGTTG CCTTCTTCTC TCGCCTGA
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Protein sequence | MARQQGWFAL ILALAIAAGS VTASFPLELG LDLRGGSQLT LEVQPAGEIT RVKAEQLEAV KAVLDRRVNG LGVAESTLQT IGDNQLVLQL PGEQDPTRAA KVLGETALLE FRAQKPGTEE EVRGLQRLKR QVESILKSKQ ERAISGESPS DDELDKQQLV EAQQAFGLQG SVGSEIEQLE QLNEKVSIKI AELFEPTSLT GKDLVTAGRQ QQQNVPDSWE VTLSFNREGG DQFAELTQSI AGTGRLLGIV LDGRSISEAS VGEQFRAAGI TGGAATISGN FNAEDARDLE VQLRGGSLPL PVEILEVRTI GPTLGAENIR RSLIAALSGL ALVAVFMVVA YRLAGLVAVL ALSLYALFNL AMYALIPVIL TLPGIAGFIL SIGMAVDANV LIFERVKDEL RRGNTLIRSI ETGFSQALSS IVDGHLTTLI SCAALFFLGT GLVKGFAATL GIGVVLSLFT ALSCTRTLLR FLMGYQALRR PTNFLPAKQL PSSLA
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