Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | P9303_09651 |
Symbol | srmB |
ID | 4777768 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Prochlorococcus marinus str. MIT 9303 |
Kingdom | Bacteria |
Replicon accession | NC_008820 |
Strand | + |
Start bp | 877054 |
End bp | 878964 |
Gene Length | 1911 bp |
Protein Length | 636 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 640086475 |
Product | putative ATP-dependent RNA helicase |
Protein accession | YP_001016981 |
Protein GI | 124022674 |
COG category | [J] Translation, ribosomal structure and biogenesis [K] Transcription [L] Replication, recombination and repair |
COG ID | [COG0513] Superfamily II DNA and RNA helicases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGGGCGTT GTCTGCCTGA TTTAAAGGAT CAATCAGGCA GACAACGCCT TTTCTCGATG ACCCATACAA AATCGCACGA GGATGTCTCG TGTTCCCCTG AGAAGAGTGC GCCTGAGATC TCTTCAACGA GCTCGGATGA TGGTTTAACC ACTGTGGCTG AGGCCACCAA TCAAAACAAT TCAGACGATG GCTCGGTCGC TGTAGCCGCT GAGGCCTGTG AAGATATTGA AGCGACAGAG TTAGTTTCCG AATTCGATTG TTTTGGCTTT AGCGAGCCGT TGCTCAAAAC CCTTGCAGAA AAGGGTTATA AGCAACCCTC TCCAATTCAG AAAGCTGCTA TTCCAGAATT GATGCTGGGT CGTGATCTAG TTGGTCAGGC TCAGACTGGA ACAGGCAAAA CAGCAGCTTT TGCGTTGCCC CTGATCGAGC GGCTTCAGGA TCATGGCAGT CGTCCCCAAG TGTTGGTGCT GGCCCCGACC CGGGAGTTGG CGATGCAGGT CGCGGATTCG TTCCGTGCTT ATGCCGTTGG CCATCCGCAT CTCAAAGTTT TGGCGGTTTA TGGCGGAGCC GATTTCCGCT CTCAGATCAA TACGCTGAAG CGTGGAGTGG ATGTTGTGGT AGGTACCCCG GGCCGCTTGA TGGATCACAT GCGGCAGGGC ACTCTCGACA CCTCTGGTTT GAGGTGTTTG GTGCTTGACG AAGCCGATGA AATGCTGCGT ATGGGCTTCA TCGATGATGT CGAATGGATC CTGGAGCAGT TGCCTAAAGA ACGTCAGATG GTGCTGTTTT CGGCAACGAT GCCATCAGAG ATCCGTCGAC TTTCGAAGCG TTACCTACAC GAACCAGCAG AGATCACGAT CAAGAGCCGT GATCAGGAGG CTCGTCTCAT CCGTCAGCGA TGCATCACTC TCCAGAACAG CCACAAACTT GAAGCCCTTA GAAGGGTTCT TGAGGCTTTC ACTGGTGAGG GAGTGATTAT TTTTGCCCGC ACCAAGGTGA TCACTCTCAC AGTTGCTGAG GCACTGGAAT CCGCTGGACA CGATGTTGCC GTACTGAATG GGGATGTCCC TCAGAACCAA CGGGAACGAA CGGTTGAACG TTTGCGCAAA GGCAGCGTGA ATATCTTGGT TGCTACTGAT GTTGCCGCTC GCGGCCTAGA TGTCGATCGC ATCAGCCTGG TGATCAACTA CGACATCCCC TTTGATAGCG AAGCCTATGT GCATCGCATC GGGCGTACCG GCCGGGCTGG CCGCAGTGGA GAGGCCATTT TGTTCGTGAA TCCTAGGGAA CGTCGCTTTG TGGGCGGCTT TGAACGTGCT GTAGGTCAAC CCATCGAACC GATGGATATC CCCAATAATG CAGCGATTAA CCAGAGTCGT CTTGATCGCC TTCGTCAACG CCTCACCACT GCCGCTAAGA CGGAGAGAGA TAACTCTGAG GAGACAGCCC TTCTCCAGGA GCTAATCCAG CGTGTTGTTG AGGAGCTCAG CCTCAGTCCA GAGCAATTGG CTGTAGCAGC ATTAGAGCTT GCTGTTGGCC CAGGCCCAAT CTTGGTGCAG GCTGATGAGG GCTGGTTGCA GCAATCAACT CAGCGCAGCC GCCGCAACGA TCGTCACGAA ATTAGTCGTG GAGGCTCTGG CCGAAGACCT GAGCGTTCAT CGAGACCGCC GGAAGATCAC ATGGAGCGCT TTCGTGTGGA AGTCGGTCAC CGCGATCGTG TCAAGCCTGG CAATCTGGTT GGTGCCATCG CCAATGAATC CGGGCTTGAA GGACGGATGA TTGGTCGCAT CCAGATTTTT GAGTCGCACA GTCTTGTGGA TCTTCCCAAA GGAATGCCTG AGGATGTTTT TAAAGATCTA AAACGTCTCA AGGTGATGAA TCGAGAGTTG CATATCCAGC GCGCTTCTTA A
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Protein sequence | MGRCLPDLKD QSGRQRLFSM THTKSHEDVS CSPEKSAPEI SSTSSDDGLT TVAEATNQNN SDDGSVAVAA EACEDIEATE LVSEFDCFGF SEPLLKTLAE KGYKQPSPIQ KAAIPELMLG RDLVGQAQTG TGKTAAFALP LIERLQDHGS RPQVLVLAPT RELAMQVADS FRAYAVGHPH LKVLAVYGGA DFRSQINTLK RGVDVVVGTP GRLMDHMRQG TLDTSGLRCL VLDEADEMLR MGFIDDVEWI LEQLPKERQM VLFSATMPSE IRRLSKRYLH EPAEITIKSR DQEARLIRQR CITLQNSHKL EALRRVLEAF TGEGVIIFAR TKVITLTVAE ALESAGHDVA VLNGDVPQNQ RERTVERLRK GSVNILVATD VAARGLDVDR ISLVINYDIP FDSEAYVHRI GRTGRAGRSG EAILFVNPRE RRFVGGFERA VGQPIEPMDI PNNAAINQSR LDRLRQRLTT AAKTERDNSE ETALLQELIQ RVVEELSLSP EQLAVAALEL AVGPGPILVQ ADEGWLQQST QRSRRNDRHE ISRGGSGRRP ERSSRPPEDH MERFRVEVGH RDRVKPGNLV GAIANESGLE GRMIGRIQIF ESHSLVDLPK GMPEDVFKDL KRLKVMNREL HIQRAS
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