| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | P9301_16771 |
|---|
| Symbol | tatD |
|---|
| ID | 4912531 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Prochlorococcus marinus str. MIT 9301 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009091 |
|---|
| Strand | - |
|---|
| Start bp | 1409501 |
|---|
| End bp | 1410295 |
|---|
| Gene Length | 795 bp |
|---|
| Protein Length | 264 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 32% |
|---|
| IMG OID | 640161274 |
|---|
| Product | TatD family deoxyribonuclease |
|---|
| Protein accession | YP_001091901 |
|---|
| Protein GI | 126697015 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0084] Mg-dependent DNase |
|---|
| TIGRFAM ID | [TIGR00010] hydrolase, TatD family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAACA TAGAACTCAT AGATTCTCAC TGTCACTTAA TATTTGAAAA TTTTGAAAGA
GATCTTGAAG ATGTTGTTTC AAGGTTGCGT TCAAAAGGTA TTAAAAAATT AGTTCATGCT
TGTTGTGAAT TAACAGAAAT TCCTAAGTTG AAAAAAATAT CTCATGAATT TAATGAAATT
TACTATTCAG TTGGATTACA TCCTCTAGAA GCAAAAAAAT GGGAACAAAG TTCAAAATCT
CTTCTAAGAA AATCAGCTCT AGAAGATAGA AGAGTTGTAG CTATTGGCGA ATTAGGTTTG
GATTTTTTCA AAAATGAAAA TAAAACTCAG CAAATTGAAG CACTGATTCC GCAAATGGAG
TTAGCCTATG AACTTAAATT GCCTGTAATT ATCCATTGTA GAGATGCTGC AAATGAAATG
ATTGAGATAT GTAGTGATCT CTCTAATAAA GGGAAATGTC CTGATGGTGT ACTTCATTGT
TGGACAGGAA CTCCAAATGA AATGAAGCAA TTCTTGGATC TTGGTTTTTA CATAAGTTTT
AGCGGAATAG TGACTTTCCC AAAAGCACAT GAAATTCATG AATGTGCCAA AATAGTACCA
AATGATAAAT ACTTAATCGA AACTGATTCA CCATTCTTGG CTCCTGTCCC TCATAGAGGT
AAAAGAAATG AACCTGCATT TGTTGAAAAT GTTGCAAAAT TTATGGCAGA TTTAAGATCT
ACTGAATTAA ACACAATTGC TAAAGAGTCA TCTAAGAATG CTGAAGATTT GTTTAAATTT
GACTTGTTAA TTTGA
|
|---|
| Protein sequence | MSNIELIDSH CHLIFENFER DLEDVVSRLR SKGIKKLVHA CCELTEIPKL KKISHEFNEI
YYSVGLHPLE AKKWEQSSKS LLRKSALEDR RVVAIGELGL DFFKNENKTQ QIEALIPQME
LAYELKLPVI IHCRDAANEM IEICSDLSNK GKCPDGVLHC WTGTPNEMKQ FLDLGFYISF
SGIVTFPKAH EIHECAKIVP NDKYLIETDS PFLAPVPHRG KRNEPAFVEN VAKFMADLRS
TELNTIAKES SKNAEDLFKF DLLI
|
|---|
| |