| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | P9301_01681 |
|---|
| Symbol | ndhF |
|---|
| ID | 4912570 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Prochlorococcus marinus str. MIT 9301 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009091 |
|---|
| Strand | + |
|---|
| Start bp | 155486 |
|---|
| End bp | 157507 |
|---|
| Gene Length | 2022 bp |
|---|
| Protein Length | 673 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 36% |
|---|
| IMG OID | 640159734 |
|---|
| Product | NAD(P)H-quinone oxidoreductase subunit F |
|---|
| Protein accession | YP_001090392 |
|---|
| Protein GI | 126695506 |
|---|
| COG category | [C] Energy production and conversion
[P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1009] NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit |
|---|
| TIGRFAM ID | [TIGR01974] proton-translocating NADH-quinone oxidoreductase, chain L |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCACAAG CTTCAGAAAT TGCCTGGTTA ATTCCCGTTT TCCCACTTAT TGGAGCAGTG
CTTTCTGGCT TAGGACTAAT AAGCATCAAC AAGAAAATTA ATAATTCAAG AGAAATTGTT
TCTGTAGGTC TGATTTCTTT CGTTGGAATT TCTGCAGTAA TTAGTTATAA AGCTTTAATT
GAACAAGTTA ATGGTTATCA ATCAGTAGAA AAATTATTTG TATGGGCCAA TGCAGGCGAT
TTCACAATTC CAATGGGATT TGTCCTCGAT CCTTTGGGGA GTGTAATGCT TGCTTTAGTA
ACTACAATAA CTTTGCTGGT AATGATTTAC TCTCATGGTT ACATGGCTCA TGACAAAGGA
TATGTCAGAT TTTTTACATA TTTAGCATTA TTTAGCAGTT CAATGATGGG ATTAATAGTT
AGTCCGAATT TATTAGAAAT TTATGTTTTT TGGGAATTAG TTGGGATGTG TTCTTATTTA
TTAGTTGGTT TTTGGTATGA CAGGGATGGC GCTGCACACG CTGCACAAAA AGCATTTGTT
GTTAATAGAG TGGGAGATTT TGGTTTACTA CTAGGAATTC TTGGCCTATT TTGGGCAACA
AATAGTTTTG ATTTTAACGA AATAGCTACT GGAATTTCTC AATCGATATC TGACCATTCG
ATACCCATTT GGGCTGCTTT ATTACTTTGT TTTTTAGTTT TTCTAGGGCC AATGGCTAAA
TCTGCTCAGT TTCCTCTTCA TGTGTGGTTA CCTGACGCAA TGGAAGGTCC TACGCCAATT
TCTGCACTTA TCCATGCTGC AACAATGGTT GCAGCAGGAA TCTTTCTTGT AGCAAGACTT
CAACCTTTGT ATTCAATATT CCCCTCTATT CAGTTCATTA TTGCTTTAGT TGGTACCATT
ACTTGTTTTT TAGGAGCCTC TATAGCTTTG ACTCAAATGG ATTTAAAAAA AGGGTTAGCT
TATAGCACTG TTTCTCAGCT TGGGTATATG ATGCTCGCAA TGGGTTGTGG AGCACCAGTA
GCAGGAATTT TTCATTTAGT AACTCATGCT TGCTTTAAAG CAATGCTATT TTTGGGATCA
GGTTCCGTAA TACATGCTAT GGAAGAAGTA GTTGGCCATC AGCCTGTATT AGCTCAAGAT
ATGAGATTGA TGGGCGGTTT AAGAAAAAAA ATGCCATATA CAGCAACAAC ATTTTTAATA
GGTTGTGTAG CAATTAGTGG AATTCCCCCA TTGGCAGGTT TTTGGAGTAA AGACGAGATA
CTCGGAAATG CTTTTATATC ATTCCCAGCT TTTTGGTTTG TAGGACTTCT AACAGCTGGC
ATGACTGCTT TTTATATGTT TAGGCTTTAT TTCTTGACAT TTGAAGGAGA TTTCAGAGGG
GAGAATAAAG AATTGCAAAA AGAGCTTCTA ATAGCCTCTA AAACAAACCT AGATGAAGAA
AATGAAGAAG AGCATCAAGA ACACGGCTCT ATTCATGAGT CACCCTGGTC AATGACATTT
CCTTTGGTAT TTCTAGCTGT ACCGTCTGTA ATTATTGGTT TTATGGGACT TCCCTGGGAT
AGCAAAATTG CAAATTTACT TAATCCTGAA GAAGCAGAGA CTGCTGCAAA AGCCTTTGAG
TTAAAAGAAT TTTTGCCTTT AGCACTTGCG TCAGTAGTTA TTGCATCAAC TGGAATCATT
ATTGCTTATC AGGCATATTT TGTGAAAAAA ATTAATTTGT CAGTTTTATT CGCCGAAAAG
TTTCCTCGCA TCAACCAATT TTTATCCAAC AAATGGTATC TAGATGATAT TAATGAAAAA
CTTTTTGTTA AGGGTAGTAG AAAACTTGCC AAAGAAGTTT TGGAGGTTGA TTCTAAGGTT
GTTGATGGAG TCGTAAATCT AACTGGACTT GTAACTTTAG GTAGTGGAGA GGGTTTAAAA
TATTTTGAGA CTGGTAGGGC TCAATTTTAT GCCCTTATTG TTTTTGGAGG AGTAATTCTG
CTGGTTGCTA TATTTGGTTT TCAATCTCCT CAAGTATCTT AA
|
|---|
| Protein sequence | MPQASEIAWL IPVFPLIGAV LSGLGLISIN KKINNSREIV SVGLISFVGI SAVISYKALI
EQVNGYQSVE KLFVWANAGD FTIPMGFVLD PLGSVMLALV TTITLLVMIY SHGYMAHDKG
YVRFFTYLAL FSSSMMGLIV SPNLLEIYVF WELVGMCSYL LVGFWYDRDG AAHAAQKAFV
VNRVGDFGLL LGILGLFWAT NSFDFNEIAT GISQSISDHS IPIWAALLLC FLVFLGPMAK
SAQFPLHVWL PDAMEGPTPI SALIHAATMV AAGIFLVARL QPLYSIFPSI QFIIALVGTI
TCFLGASIAL TQMDLKKGLA YSTVSQLGYM MLAMGCGAPV AGIFHLVTHA CFKAMLFLGS
GSVIHAMEEV VGHQPVLAQD MRLMGGLRKK MPYTATTFLI GCVAISGIPP LAGFWSKDEI
LGNAFISFPA FWFVGLLTAG MTAFYMFRLY FLTFEGDFRG ENKELQKELL IASKTNLDEE
NEEEHQEHGS IHESPWSMTF PLVFLAVPSV IIGFMGLPWD SKIANLLNPE EAETAAKAFE
LKEFLPLALA SVVIASTGII IAYQAYFVKK INLSVLFAEK FPRINQFLSN KWYLDDINEK
LFVKGSRKLA KEVLEVDSKV VDGVVNLTGL VTLGSGEGLK YFETGRAQFY ALIVFGGVIL
LVAIFGFQSP QVS
|
|---|
| |