| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | P9211_07161 |
|---|
| Symbol | secD |
|---|
| ID | 5730928 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Prochlorococcus marinus str. MIT 9211 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009976 |
|---|
| Strand | + |
|---|
| Start bp | 626450 |
|---|
| End bp | 627919 |
|---|
| Gene Length | 1470 bp |
|---|
| Protein Length | 489 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 641285079 |
|---|
| Product | preprotein translocase subunit SecD |
|---|
| Protein accession | YP_001550601 |
|---|
| Protein GI | 159903257 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0342] Preprotein translocase subunit SecD |
|---|
| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.145798 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTCGTC AGCAAGGTTG GTTTGCACTT CTTCTTGCAT TGGTAATTGC TTCATGTTCG
GTTTGCTTTA GTCAACCATT TCAGTTAGGT CTGGACCTTC GTGGTGGAAG TCAGCTCACT
TTAGAAGTTC AACCGACAAA AGATTTTCCC CAGATCAAAG ATGAACAAGT TGAAGCAGTA
AAAGCAGTCT TAGATCGCAG AGTTAACAGC CTGGGAGTAT CAGAATCAAC TCTTCAGACT
ATTGGGACCA ATCAACTAAT CTTAGAACTT CCAGGAGAGC AAGAGCCTTC AAGGGCGGCA
AGGGTTTTAG GGAAAACAGC ACTTCTTGAG TTTAGGGCTC AGAAGGAAGG GACTAAGACA
GAGATGAAGC GACTTCAATC TCTTAGGTCT GTTTTAAGGA ATATTGCTAT CTCTAAGGGC
GTAATAAATG ACGAGAATGG AGTTTTTCCT GACAATGAAA AGCAACAACT TAAGAATGTG
AATAAATCTT TAGGGCTAAA GGAAACTACT GGCAATGATT TTGAGCAGCT TGAAAATCTA
ACCAAAGTTA TTAATACAAG AATAGTTAAC CTTTTTGAGC CTTCTGATTT GACAGGTAGG
GATCTGGTAA GTGCAGGGCG CCGTCAAGAA CAAAACCTCT CTAGTTGGGA GGTAACTTTA
ACCTTTAATC AAAGCGGTGG AGATAAATTC TCTCAGTTAA CCAAGTCAAT TGCAGGATCA
GAGCGCCTTT TAGGAATAGT TTTAGATGGC GAATCGATTA GTGAGGCAAG CGTTGGAGAA
CAATTCAAAG TTGCAGGGAT TACTGGTGGT GCGGCTACTA TTAGTGGAGG GTTTACAGCA
GACTCTGCTC GGGAATTAGA AGTTCAATTG AGGGGAGGTT CATTGCCATC GCCTGTAAAA
ATAATCCAGG TAAGGACAAT TGGCCCAACG CTTGGTAGTG AGAATATTCG TAGAAGTTTG
ATTGCATCAT TAAGTGGTTT ATCTTTAGTG GCAGTTTTTA TGGTTTTGTT TTACCGGGTT
CCTGGATTAG TGGCTGTAAT CGCGCTTAGT TTTTATGCGC TTTTTAATAT TGCTGTTTAT
ACATTAATCC CAGTCACCCT TACTCTCCCT GGTATTGCAG GCTTTATCTT AAGCATTGGA
ATGGCTGTTG ATGCAAACGT ACTTATTTTC GAAAGAGTTA AAGATGAGCT TCGAAGAGGT
AATACATTGA TTCGCTCTAT TGATAGTGGA TTTTCTCAAG CATTCTCTTC CATTATTGAT
GGGCATATAA CCACCTTGAT TAGCTGTACA GCACTTTTTT ACCTGGGAAC TGGTTTCGTA
AAAGGTTTTT CAGCAACACT TGGAATTGGA GTCGTTATTA GTTTATTTAC GGCACTTTCT
TGTACTCGGA TACTTCTAAG ATTCCTTATG AGCTATAAAT CATTAAGGAG ACCAACTAAC
TTTTTGTCGG CCAGTCAACT TCCTTCCTGA
|
|---|
| Protein sequence | MARQQGWFAL LLALVIASCS VCFSQPFQLG LDLRGGSQLT LEVQPTKDFP QIKDEQVEAV
KAVLDRRVNS LGVSESTLQT IGTNQLILEL PGEQEPSRAA RVLGKTALLE FRAQKEGTKT
EMKRLQSLRS VLRNIAISKG VINDENGVFP DNEKQQLKNV NKSLGLKETT GNDFEQLENL
TKVINTRIVN LFEPSDLTGR DLVSAGRRQE QNLSSWEVTL TFNQSGGDKF SQLTKSIAGS
ERLLGIVLDG ESISEASVGE QFKVAGITGG AATISGGFTA DSARELEVQL RGGSLPSPVK
IIQVRTIGPT LGSENIRRSL IASLSGLSLV AVFMVLFYRV PGLVAVIALS FYALFNIAVY
TLIPVTLTLP GIAGFILSIG MAVDANVLIF ERVKDELRRG NTLIRSIDSG FSQAFSSIID
GHITTLISCT ALFYLGTGFV KGFSATLGIG VVISLFTALS CTRILLRFLM SYKSLRRPTN
FLSASQLPS
|
|---|
| |