| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | P9211_04331 |
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| Symbol | topA |
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| ID | 5730470 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Prochlorococcus marinus str. MIT 9211 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009976 |
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| Strand | + |
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| Start bp | 408102 |
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| End bp | 410801 |
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| Gene Length | 2700 bp |
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| Protein Length | 899 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 641284790 |
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| Product | DNA topoisomerase I |
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| Protein accession | YP_001550318 |
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| Protein GI | 159902974 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0550] Topoisomerase IA |
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| TIGRFAM ID | [TIGR01051] DNA topoisomerase I, bacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.0369496 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGCGCAAG CTCTAGTAAT CGTTGAAAGT CCAACAAAGG CACGAACTAT AAAAAGCTTC
TTGCCGAAAG ACTTTGAAGT GGTCGCTTCC ATGGGGCATG TCAGGGATCT TCCCAATAGT
GCAAGTGAGA TCCCTGCTGC TCAAAAAGGC GAAAAATGGG CAACTTTAGG GGTGAATACG
ACGGCGGACT TTGAACCTTT GTATGTTGTA CCAAAAGATA AAAAAAAGAT TGTTAGGGAG
CTTAAAACTG CTTTAAAAGG CGCTGACCAG CTTTTGCTTG CAACTGATGA AGATCGAGAA
GGCGAAAGCA TTAGCTGGCA CTTATTGCAG CTTCTGAACC CAAAGGTTCC TGCCAAGAGA
ATGGTTTTTC ATGAGATTAC AAAGGACGCA ATATCTCATG CTCTGACTCA GACAAGAGAT
CTTGATATGG AATTGGTCCA TGCTCAAGAG ACCAGGCGTA TTCTTGACCG ATTAGTGGGA
TACACCCTTT CACCTCTTCT TTGGAAAAAG GTTGCATGGG GACTTTCTGC TGGAAGAGTT
CAATCTGTTG CTGTCCGACT CCTAGTTCTC CGTGAACGTG CCCGTAGAGC TTTTAGAAGC
GCGAATTATT GGGATTTGAA AACTACTTTA CAAAATCAAG GGAACTCATT TGAGGCAAAA
CTGGCAACTC TGGGCGGCCA GAAAATAGCT AGCGGGATTG ATTTTGATGA TTCCACTGGC
TTGATGAAGG ATGGAAATAA TGCTCGCTTG GTCAGTGAAA AAGAAGCAAA AGATCTTGCA
AAAACACTCC AATTGAATGA ATGGAAAGTT AGTTCGATTG AAGAAAAGCC TACAGTTAGG
AGACCAGTAC CCCCATTTAC TACAAGTACT CTTCAACAGG AGTCAAACCG CAAGCTTAGG
CTCTCGACTA GAGAAACGAT GAGATGTGCA CAGGGTCTAT ATGAGAGAGG TTTTATAACT
TATATGCGAA CTGATTCAGT TCATCTCTCA GAGCAGGCAA TTAAAGCTTC TAGAAAATGT
ATTGAGTCTA GATATGGAGC TGATTACTTA AGTAATAAAG TCCGTCAATT TAGCAATAAG
TCTAGAAATG CTCAAGAAGC ACATGAAGCC ATTCGGCCTG CGGGAGCAAC TTTTAAGATG
CCAGATCAAA CAGGGCTTGA AGGTAGAGAT CTGGCGCTTT ATGAATTGAT ATGGAAAAGA
ACGGTTGCGA GTCAAATGCA AGAAGCTCGC TTGACAATGA TTGGAGTTGA AATAACAGTT
GGTGATGCTG TGTTTCGTTC TTCTGGTAAG AGAATTGACT TTCCTGGTTT CTTCCGAGCT
TATGTGGAAG GAAATGATGA TCCAGATGCA GCCTTAGAAG GTCAAGAAGT CCTTCTTCCA
AGTTTGGAGG TGGGAGATAC ACCTATTGTC GAAAAGATAG AGCCGTTAGC TCATCAAACA
CAACCACCTG CCCGCTATAG TGAAGCTTCC TTGGTAAAAA TGCTTGAGAA GGAAGGTATT
GGAAGACCTT CTACGTATTC AAGTATTATT GGAACCATTG TGGATAGAGG TTATTCCTCT
ATCCACAATA ATTCTTTAAT ACCTAGCTTT ACAGCATTTG CAGTAACGGC TTTATTAGAA
GAACATTTCC CAGATCTAGT TGATACTAGG TTTACTGCTA GAATGGAATT GACTTTAGAT
GAAATCTCTA CAGGTAAAGT GGAGTGGTTA CCATATTTAT CAGGCTTTTA TAAAGGAGAG
GATGGCCTTG AAAATCAAGT CGAGAAAAAA GAAGGAGACA TAGACCCAGG TTTATCTAGA
ACTATTGCTT TAGAAGGCCT AAAATGTGTT GTCAGGATTG GACGCTTTGG AGCCTATCTT
GAATCGAGAC GTCTAGGAGA TAATGGCGAA GAAGAGTTGA TTAAAGCCAC ACTCCCTCAA
GAAACGACCC CAGCAGATCT GGATGAAGAG AAAGCAGAGT TAATTCTGAA GCAAAAATCA
GATCAACCTG ATCCTTTGGG GACGGATCCT GAAACAGGTG AAGAGATTTA TTTGCTCTTT
GGTCAATATG GCCCTTATGT TCAGAGAGGG CAAGTAACTG ATGAGGTGCC GAAACCAAAA
AGAGCTTCAG TGCCAAAAGC AGTTAAACCA GAAGATCTGA CTATAGAGGA AGCCCTTGGG
TTGCTTAAAT TGCCACGTGC TCTTGGGGAG CATCCTGATG GGGGTAAGAT TGCTGCAGGT
CTTGGGCGCT TTGGTCCTTA TATTGTTTGG AATAAAGGAA AAGGAGAAAA AGATTATCGA
TCACTAAAAG GAGCTGATGA TGTTCTTGAA GTAAAGATTG AAAGAGCACT TGAGTTATTG
GCTATGCCAA AGAGAGGTAG AGGTGGTAGG ACTGCATTGA AAGACCTTGG CATACCTAAG
GGACAGAAAG ATAAGGTTGA GGTTTATAAC GGCCCCTATG GACTTTACGT AAAACAAGGG
AAAGTCAATG CTTCTTTGCC AAAAGGTAAA AGTGCTGAAG AAATTACCAT CGAAGAAGCA
GTTGAATTGC TCGAAGCTAA ACTTACAAGT AAAAAAACTA AAAAGAAAAA AGTAGCTAAA
CCCAAAAGCT CTACAAAAAG CAAAGCAAAG TCCAATAAAG CGACTCCTAA AGCTCCATCT
ACTACTAAGT CAGGACGATT AAGAGCAAGT GCGGTAAGAG TTATTAAGTC TGGTAATTAA
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| Protein sequence | MAQALVIVES PTKARTIKSF LPKDFEVVAS MGHVRDLPNS ASEIPAAQKG EKWATLGVNT
TADFEPLYVV PKDKKKIVRE LKTALKGADQ LLLATDEDRE GESISWHLLQ LLNPKVPAKR
MVFHEITKDA ISHALTQTRD LDMELVHAQE TRRILDRLVG YTLSPLLWKK VAWGLSAGRV
QSVAVRLLVL RERARRAFRS ANYWDLKTTL QNQGNSFEAK LATLGGQKIA SGIDFDDSTG
LMKDGNNARL VSEKEAKDLA KTLQLNEWKV SSIEEKPTVR RPVPPFTTST LQQESNRKLR
LSTRETMRCA QGLYERGFIT YMRTDSVHLS EQAIKASRKC IESRYGADYL SNKVRQFSNK
SRNAQEAHEA IRPAGATFKM PDQTGLEGRD LALYELIWKR TVASQMQEAR LTMIGVEITV
GDAVFRSSGK RIDFPGFFRA YVEGNDDPDA ALEGQEVLLP SLEVGDTPIV EKIEPLAHQT
QPPARYSEAS LVKMLEKEGI GRPSTYSSII GTIVDRGYSS IHNNSLIPSF TAFAVTALLE
EHFPDLVDTR FTARMELTLD EISTGKVEWL PYLSGFYKGE DGLENQVEKK EGDIDPGLSR
TIALEGLKCV VRIGRFGAYL ESRRLGDNGE EELIKATLPQ ETTPADLDEE KAELILKQKS
DQPDPLGTDP ETGEEIYLLF GQYGPYVQRG QVTDEVPKPK RASVPKAVKP EDLTIEEALG
LLKLPRALGE HPDGGKIAAG LGRFGPYIVW NKGKGEKDYR SLKGADDVLE VKIERALELL
AMPKRGRGGR TALKDLGIPK GQKDKVEVYN GPYGLYVKQG KVNASLPKGK SAEEITIEEA
VELLEAKLTS KKTKKKKVAK PKSSTKSKAK SNKATPKAPS TTKSGRLRAS AVRVIKSGN
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