Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Oter_4403 |
Symbol | |
ID | 6208782 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Opitutus terrae PB90-1 |
Kingdom | Bacteria |
Replicon accession | NC_010571 |
Strand | + |
Start bp | 5695629 |
End bp | 5696207 |
Gene Length | 579 bp |
Protein Length | 192 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 641694069 |
Product | ECF subfamily RNA polymerase sigma-24 factor |
Protein accession | YP_001821274 |
Protein GI | 182416208 |
COG category | [K] Transcription |
COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.0790596 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.211953 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGGACCCGG ACCTGCCGCT CATCGAAGCG CTTCAGGCCG GCGATGATTC GGCGCTTAAC GAGCTGATCA ACCGCCACCG CGAACCGCTC CACCGATTCG TTTTCCGCTA CTTGCGGGAC GAAACCGCCG CCGGCGATGT GGTGCAGGAG ACGTTCGTGC GGGTGTATTT CAAAGCCGGA AAGTTCGCGC CCAAATCGTC GGTCAAAACC TGGATCTACA CGATCGGGCT CAATCTCTGC CGCGATTACG GCCGGCGGCT CGGACGCCGG CGCGCCGATG TATCCCTGGA TGCGCCGGCG CACGACGACG GTCCGCGCTT CGAGGTCGCC GACAGCGCGC CCGCCCCATC CGTCAGGGCT GCGGATGCCG ACCGGTTCAG CCGGTTGCAG GCGGCGATCG ACCGGCTGCC AAGAAAACTG AAGGAAGCGT TGGTTCTCTT CGCACTCGAG GGACGCAGCC AGAACGAAAT CGCCGAGTTC CTGCGCATAT CGCCTAAGGC CGTTGAGACG CGGGTTTATC ATGCGAAAGC GAAATTGCGT GCCGCACTCG GGAGCGAAAT GAGTTTCGGC GACGCTTGA
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Protein sequence | MDPDLPLIEA LQAGDDSALN ELINRHREPL HRFVFRYLRD ETAAGDVVQE TFVRVYFKAG KFAPKSSVKT WIYTIGLNLC RDYGRRLGRR RADVSLDAPA HDDGPRFEVA DSAPAPSVRA ADADRFSRLQ AAIDRLPRKL KEALVLFALE GRSQNEIAEF LRISPKAVET RVYHAKAKLR AALGSEMSFG DA
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