Gene Oter_4403 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagOter_4403 
Symbol 
ID6208782 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameOpitutus terrae PB90-1 
KingdomBacteria 
Replicon accessionNC_010571 
Strand
Start bp5695629 
End bp5696207 
Gene Length579 bp 
Protein Length192 aa 
Translation table11 
GC content63% 
IMG OID641694069 
ProductECF subfamily RNA polymerase sigma-24 factor 
Protein accessionYP_001821274 
Protein GI182416208 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0790596 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.211953 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGGACCCGG ACCTGCCGCT CATCGAAGCG CTTCAGGCCG GCGATGATTC GGCGCTTAAC 
GAGCTGATCA ACCGCCACCG CGAACCGCTC CACCGATTCG TTTTCCGCTA CTTGCGGGAC
GAAACCGCCG CCGGCGATGT GGTGCAGGAG ACGTTCGTGC GGGTGTATTT CAAAGCCGGA
AAGTTCGCGC CCAAATCGTC GGTCAAAACC TGGATCTACA CGATCGGGCT CAATCTCTGC
CGCGATTACG GCCGGCGGCT CGGACGCCGG CGCGCCGATG TATCCCTGGA TGCGCCGGCG
CACGACGACG GTCCGCGCTT CGAGGTCGCC GACAGCGCGC CCGCCCCATC CGTCAGGGCT
GCGGATGCCG ACCGGTTCAG CCGGTTGCAG GCGGCGATCG ACCGGCTGCC AAGAAAACTG
AAGGAAGCGT TGGTTCTCTT CGCACTCGAG GGACGCAGCC AGAACGAAAT CGCCGAGTTC
CTGCGCATAT CGCCTAAGGC CGTTGAGACG CGGGTTTATC ATGCGAAAGC GAAATTGCGT
GCCGCACTCG GGAGCGAAAT GAGTTTCGGC GACGCTTGA
 
Protein sequence
MDPDLPLIEA LQAGDDSALN ELINRHREPL HRFVFRYLRD ETAAGDVVQE TFVRVYFKAG 
KFAPKSSVKT WIYTIGLNLC RDYGRRLGRR RADVSLDAPA HDDGPRFEVA DSAPAPSVRA
ADADRFSRLQ AAIDRLPRKL KEALVLFALE GRSQNEIAEF LRISPKAVET RVYHAKAKLR
AALGSEMSFG DA