| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_4380 |
|---|
| Symbol | |
|---|
| ID | 6208776 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Opitutus terrae PB90-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010571 |
|---|
| Strand | + |
|---|
| Start bp | 5674080 |
|---|
| End bp | 5675492 |
|---|
| Gene Length | 1413 bp |
|---|
| Protein Length | 470 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 641694046 |
|---|
| Product | integrase family protein |
|---|
| Protein accession | YP_001821251 |
|---|
| Protein GI | 182416185 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG4974] Site-specific recombinase XerD |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGCTTC AGATACACCC TGGCAAAACG AAGTGGTGGT ATGGCAGGAT CATCGTTAAC
GGCCGAAAGA TTAAAAAAAA CCTCGGGATC GAGGTGCGCG GCGTTCCCCC GCCGACACTC
TCCCAGAGGG GCGACGATGC CTTCGAACGT TCACGGGCAA AGGCCCAAGC CGCGCTTGAG
CGTCTGCAAC TGGAACTGAG AAAACGCACC TCCGCCGAAG AACTCGTTCA GACAATCCAC
GAGATTCGCA CGGGAGCACG CGTTGCATCC ATTCCGCTCT CAGATGCCAG TGCCCGCTGG
AAGGCGCTTC CACGAAGGCG TCCGCTCAGC GAGCGCTACG TGGATCAAGC CGAGGCTTGG
ATGAAGCGAT TCGTGGAGTT CGTCGGGTTA AGTAACGCAG CGATTCGGGA CATGGATCAG
GTTCAGTCTC CAATCGCACG TGCGTTCCTA AAATCTGAGC ACGAGCGCGG GGTGTCCGCG
AAGACCTACA ACAATATCCT TATTTTCCTG CGGTCCTGTT TCGAATCACT CAAAGATGAA
GCCGGCATCG CCAAAAACCC CTTCGCCGGC ATTCCGACAC GCGAGGAGGA CACTGTCTTC
CGCAAGCCGT TCAGCACCGA GGAACTCGCT GCGATTGTGA CGGCAGCCAA GAGCGATCCT
TTCATCTATC CCGTCGTGGT GACGGCGATC TGCACGGCAA TGCGTCGAGG TGATTGCTGT
CTGCTTCAGC GGTCGGCAAT CGACCTGCCA AATCGATTCA TTAAGGTCAA AACTTCGAAG
ACGGGCGAGT TGGTGCAGAT TCCGATCTTT CCACTCCTGC AGGAAGTGCT CGAGAAGATC
GAGAAGAGCG ACAGTCCGTA TGCTTTTCCC CAACAAGCGG CCATCTATGA GCTCAATCCG
GACAACATCA CGCTGCGTGT CCGGAAGGTG ATGCGCGTGG CAGGCTTTTT TGATCCCGGA
GAGGCGGACT CCGCAGAGGA GCAAGCAGTC TCTCGCGGCG AGATCCACCA GGAACGAGAA
AACGGTCTGC GCAAAGCCTC CGTGCGGGAT TTTCATTCCT TCCGCGTTAC CTGGGTCACC
CTCGCGCTCA ATGCCGGCGT CCCACTGGAA ATCGTTCAAA AGGTCACCGG TCACCGGACA
GCCGGCATCG TGATGAAACA CTACTTCCAG CCGGGCCGAG AAGACTTTCG CCGAACGCTT
TCCGGCAAGC TTCCGGCTCT GATCGGCGGA ACGCCCGAGC CGAAGCCGCT AGACCCGTCC
GAACTCCGCA CACAACTGAA TGCCATGAAG CCGGGAACCT GGCGAAAGAT TCGCGACGAA
CTCATCGCGC GTTTACCCAA AGAAGAGGAA GGCGCCGTCG AAGTTCGCGC GACGAAAGCT
GAACCTGCGG CGTCGGCCAA GGCGTCTGAC TGA
|
|---|
| Protein sequence | MALQIHPGKT KWWYGRIIVN GRKIKKNLGI EVRGVPPPTL SQRGDDAFER SRAKAQAALE
RLQLELRKRT SAEELVQTIH EIRTGARVAS IPLSDASARW KALPRRRPLS ERYVDQAEAW
MKRFVEFVGL SNAAIRDMDQ VQSPIARAFL KSEHERGVSA KTYNNILIFL RSCFESLKDE
AGIAKNPFAG IPTREEDTVF RKPFSTEELA AIVTAAKSDP FIYPVVVTAI CTAMRRGDCC
LLQRSAIDLP NRFIKVKTSK TGELVQIPIF PLLQEVLEKI EKSDSPYAFP QQAAIYELNP
DNITLRVRKV MRVAGFFDPG EADSAEEQAV SRGEIHQERE NGLRKASVRD FHSFRVTWVT
LALNAGVPLE IVQKVTGHRT AGIVMKHYFQ PGREDFRRTL SGKLPALIGG TPEPKPLDPS
ELRTQLNAMK PGTWRKIRDE LIARLPKEEE GAVEVRATKA EPAASAKASD
|
|---|
| |