| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_4253 |
|---|
| Symbol | |
|---|
| ID | 6204461 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Opitutus terrae PB90-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010571 |
|---|
| Strand | - |
|---|
| Start bp | 5503173 |
|---|
| End bp | 5503796 |
|---|
| Gene Length | 624 bp |
|---|
| Protein Length | 207 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 641693921 |
|---|
| Product | tail collar domain-containing protein |
|---|
| Protein accession | YP_001821126 |
|---|
| Protein GI | 182416060 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG4675] Microcystin-dependent protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.0588212 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.934019 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTCGGCT TCACGTTCAA CCCCCGCGGC TGGGCCTATT GCGCCGGCCA GTTGCTGCCC
ATCGCCCAGA ACCAAGCACT GTTCGCTCTG CTCGGCACAA CCTATGGCGG CAATGGCCAG
ACGAATTTCG CGCTGCCTGA TCTGCGTGGT CGCGTGCCGG TGGGCGCCAC GAATACATCG
GGATCGCCGT TGCCTCCGGT CCAGGTCGCC CAGACCGGCG GCACGCCGCA GGTGCAGTTG
ACGATGAACG AACTGCCGAT GCATAACCAC CTCGCGACGT TCACGGGGAC GGGTGGCGGC
GGGGGGAGTT CGCCGCAGGT CGCCGTCAAG GTCGGCGTGA CCTCGACTAC CGGCACGCTG
AACACTCCGG GTGGGAATGT GCTGGCGGCA GCACCGACAG CGGGGCCAAA CCAGGCGCTC
GTTTATGCCC CGTCAACCGC CAACCTCGAC GGCGAACTTG CTGGCATCAG CGTCGCTGTT
ACCGGCGGCG GCGGTGGTGG CATCACCGGC GGAACCGTGA CGGTGAATCC CTCTGGCGGC
GGCCAGCCGT TCTCGATCAT GCCTCCGTTC ATCGGGATCA ACTTCGTCAT CGCACTGGAA
GGCATCTTCC CGTCGCGGAG TTGA
|
|---|
| Protein sequence | MVGFTFNPRG WAYCAGQLLP IAQNQALFAL LGTTYGGNGQ TNFALPDLRG RVPVGATNTS
GSPLPPVQVA QTGGTPQVQL TMNELPMHNH LATFTGTGGG GGSSPQVAVK VGVTSTTGTL
NTPGGNVLAA APTAGPNQAL VYAPSTANLD GELAGISVAV TGGGGGGITG GTVTVNPSGG
GQPFSIMPPF IGINFVIALE GIFPSRS
|
|---|
| |