Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Oter_4029 |
Symbol | |
ID | 6204992 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Opitutus terrae PB90-1 |
Kingdom | Bacteria |
Replicon accession | NC_010571 |
Strand | + |
Start bp | 5227793 |
End bp | 5229121 |
Gene Length | 1329 bp |
Protein Length | 442 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 641693697 |
Product | major facilitator transporter |
Protein accession | YP_001820903 |
Protein GI | 182415837 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.00530062 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 5 |
Fosmid unclonability p-value | 0.0326348 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGAATCCGC CCGCCGCCGC ACCGCAGCCT TCCCGTCCGC TCTCGCTCGG AGTCATTTTC CTCACGCTGT ACATCGACCT GATCGGGTTC TCCATCATCT TTCCGTTCGT TCCGGATCTG ATGGAGTATT ACCTGCGTGG CGAAACGCCG GGCGGTCTGC TCGCCTGGCT GCTCGCCCAG ACCAACGCAC TCGCTGCTCT CCTCGGCAAT CACGACCACC TTGCCGACGT GCTGTTCGCC GGCGTGCTGA CGTCGTTCTT CTCCATTCTG CAGTTCGTGT TCGCGCCGTT CTGGGGCGCG TTGTCCGACC GTCGTGGCCG CCGCAGTGTC CTGCTGCTCA CCGTGTGCGG CACCGCGGCC GGTTACGCGC TCTGGGTTTT CAGCGGGTCG TTCTGGCTCT TCATGCTGTC GCGCGTCATC TGCGGCGCGT TCGGCGGCAA TCTGTCCGTC GCCACGGCCG CGGTCGCCGA CGTCACCAGC CGGCAGGAGC GTTCGCGCGC GATGGGTTTG GTCGGCGCGG CCTTCGGCCT CGGCCTCGTG ACCGGCCCGA TGCTCGGCGC GATTTCCGCC TCGCACAACC TGCTGGCGTC GTATCCCTCG CTCGCCCGCT TCGGCATCAA CCCGTTTTCC GTTCCGGCGC TGATCGCGCT CGGCATGTCG CTGGTGAACG TGGTCTGGAT CGCGCTGCGG TTCCGCGAAA CGGTGAGCAC GGCAACGCGG GACGAATCCG CCGCGACGCG GCTGCGCAAT CCGCTCCGCG CGATCTTCGC GCTGCCCAGC GCCGCGGTCC GCCGCGCCAA CCTGGTCGCG TTCATCTTCT CGGTCGCATT CGTCGCCATG GAGACCTCGC TCACCTTCCT CGCCGCCGAA CGGTTCGGTT ATACCGCCCG GCAAAACGGC ATGCTCATGG TGTTTCTCGG CGTCTGCTCG ATCATCACCC AAGGCATGAT CGTGCGCTGG CTGCTGCGCG AAACCAGTGA ACTGCGCGTG CTCGCCGGTG GGTTGATTGC GGCGGCCGCC GGGCTGGTGT GCATCGGACT GGCGCCCGCG CCCTGGCTGG TTTTCGTCGG TCTTGCGTTC CTCGCCACCG GCTCGGGGCT CGTCAATCCC TCCACCACCG GACTCATCTC GCTCTACAGC CACACCGCGG AACAGGGGCG CGCGCTCGGC GTGTTCCGTT CGCTCGGCTC GCTCTCGCGG GCGATCACGC CGGTTTGCGC CGGCACAGCC TACTGGATCT TTGGCGGCGG CAGTGTATTT GTCGTGGCCG CGGGGTTCGC GCTGGCCGCA CTCTGGCTCA GCCGCACCCT CCCCTTGCCC GACAAATGA
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Protein sequence | MNPPAAAPQP SRPLSLGVIF LTLYIDLIGF SIIFPFVPDL MEYYLRGETP GGLLAWLLAQ TNALAALLGN HDHLADVLFA GVLTSFFSIL QFVFAPFWGA LSDRRGRRSV LLLTVCGTAA GYALWVFSGS FWLFMLSRVI CGAFGGNLSV ATAAVADVTS RQERSRAMGL VGAAFGLGLV TGPMLGAISA SHNLLASYPS LARFGINPFS VPALIALGMS LVNVVWIALR FRETVSTATR DESAATRLRN PLRAIFALPS AAVRRANLVA FIFSVAFVAM ETSLTFLAAE RFGYTARQNG MLMVFLGVCS IITQGMIVRW LLRETSELRV LAGGLIAAAA GLVCIGLAPA PWLVFVGLAF LATGSGLVNP STTGLISLYS HTAEQGRALG VFRSLGSLSR AITPVCAGTA YWIFGGGSVF VVAAGFALAA LWLSRTLPLP DK
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