Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Oter_3863 |
Symbol | mdoD |
ID | 6204540 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Opitutus terrae PB90-1 |
Kingdom | Bacteria |
Replicon accession | NC_010571 |
Strand | - |
Start bp | 5015312 |
End bp | 5016871 |
Gene Length | 1560 bp |
Protein Length | 519 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 641693531 |
Product | glucan biosynthesis protein D |
Protein accession | YP_001820737 |
Protein GI | 182415671 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG3131] Periplasmic glucans biosynthesis protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 5 |
Fosmid unclonability p-value | 0.0232574 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACACCC ACACTCTTTC GGCCGCGCTG GTGACGAATC GTGCCCCGCT CAACTTTCGC CGCGCCGGCG CGTGGTTGCT CGGCGTGCTG CTGCTGGGCG CGGCGTGGAA CCGCGCGCCG GCGGCGGACG AACCGTTCGA TTTCGAGACC CTTCGCTACC GGGCGAGGAT GCTGGCCGCG AAACCCTACG TGGCGCCCGC GAGCCGTGTG CCCGAGTGGC TGCTGAAGCT GAGCTACGAC GAGCACCGGC GCATCCGGTT TGATCCGGCT CATTCCTGGT GGCGCCGGGA GCGGCTGCCG TTCGAGCTGC AGTTCTTCCA CCCGGGTTTC ATCATCAAGA ACACCGTGCA GATCTCGGAG ATCCGCCGCG GCGAGCCGAC GCTGATCAAG TTCGACCCCG AGCTGTTCAT CTATGACCGG CTGGAGCGCG GCGAAATCCC GGGCACGATG GGCTTCGCAG GCTTCAAGAT TCTTTATCCG ATGAACAAGC CGGGCGACGA ACTCGGCGCG TTCCAAGGCG CGAGCTATTT CCGGCTGCTG TGCCAGAAAG CGATCTACGG ACTCTCCGCG CGCGGGCTGG CGCTGAACAC CGCGGAGCCG GGCGGCGAAG AGTTTCCGAC GTTCACCGAC TTCTGGATCG AGCGGCCGGA GCCGCACGCG AAGAGCATCA CGCTCTACGC GCTGCTCGAC AGCCCGAGTG TCGCCGGCGC CTACCGGTTC GTGATCACGC CGGGCGCGGA TACCGTGGCG CACGTAAAGG CGGCGTTGTT TTTCCGCAAA CAGGTGACGA CCGTTGGGCT CGCGCCACTC ACCAGCATGT TCTGGCACGG CGAGAACACG AACACCCAGA CGGATGATTT CCGCCCGGAG GTGCACGACT CCGACGGGCT GATGCTGTTC ACCGGCGCGG GCGAATGGCT CTGGCGGCCG GTGACGAATC CGACCGCGGT GCGCGTGGCG GCGTTCAGCG ACGAGCGTCC GCGCGGGTTC GGGCTGCTGC AGCGCGATCG GAATTTCGAA AACTACCAGG ACCTCGAGGC GGCGTATCAC AGCCGGCCGA GCGCATGGGT GGAGCCGATC GGCAATTGGG GCGCAGGCTC CGTGCGGTTG GTGGAAATTC CCACGCCCGA CGAGACGAAC GACAACATCG TCGCGTTCTG GACGCCGCGG GACGTGCCGC CGGTCGGCGA GCCGTTGGTG TATGAATACC GGCTGCACTG GTTCACCGAG CAGATTCACC CGCCCGCCGG CTACACGGTC TCGACACGGC ACGGCCGGAC GAAGACGCAC GAGCCGGAAC TCGAACGGTT CCATCTCGAT TTCGCCGGAC CGTATTTGAA CAACCAGAGC GCGGATCCGG CGATCGAACC GGTCGTGACG GTCGGCGACG GCGCCAAGCT CGCGCATGCG ACCGTGCAGA AGAACCCGTT CAACGGCACC TGGCGCGTGG CGTTTGCGAT CCGGCCGGAC GGTTCGGGCC GGCCGGTCGA GTTGCGGTGT TTTCTGCGCA AGTCGCCGCA CGTGCTGACG GAAACCTGGA GTTATCTGTG GCAACCCTGA
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Protein sequence | MNTHTLSAAL VTNRAPLNFR RAGAWLLGVL LLGAAWNRAP AADEPFDFET LRYRARMLAA KPYVAPASRV PEWLLKLSYD EHRRIRFDPA HSWWRRERLP FELQFFHPGF IIKNTVQISE IRRGEPTLIK FDPELFIYDR LERGEIPGTM GFAGFKILYP MNKPGDELGA FQGASYFRLL CQKAIYGLSA RGLALNTAEP GGEEFPTFTD FWIERPEPHA KSITLYALLD SPSVAGAYRF VITPGADTVA HVKAALFFRK QVTTVGLAPL TSMFWHGENT NTQTDDFRPE VHDSDGLMLF TGAGEWLWRP VTNPTAVRVA AFSDERPRGF GLLQRDRNFE NYQDLEAAYH SRPSAWVEPI GNWGAGSVRL VEIPTPDETN DNIVAFWTPR DVPPVGEPLV YEYRLHWFTE QIHPPAGYTV STRHGRTKTH EPELERFHLD FAGPYLNNQS ADPAIEPVVT VGDGAKLAHA TVQKNPFNGT WRVAFAIRPD GSGRPVELRC FLRKSPHVLT ETWSYLWQP
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