| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_3696 |
|---|
| Symbol | |
|---|
| ID | 6206473 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Opitutus terrae PB90-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010571 |
|---|
| Strand | - |
|---|
| Start bp | 4800993 |
|---|
| End bp | 4802855 |
|---|
| Gene Length | 1863 bp |
|---|
| Protein Length | 620 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641693364 |
|---|
| Product | TonB-dependent receptor |
|---|
| Protein accession | YP_001820573 |
|---|
| Protein GI | 182415507 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG4206] Outer membrane cobalamin receptor protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.405494 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTCCCC TCCCTCGTCG GTCGCGCTCG TCGCGGCTGA TTCCCGCCTT CCTGCTTGCG
CTCGGCGCCC TCGCGTCGGC GCGGGCTCAA TTCACGCTCG CCGGCACGTC GGCGATTGTG
CTCGACGACT ACGTCATCTC GGCGTCCCGC ACGCCGCAGG ATCCTAGATA CACGCCGAGC
AGCGTGAGCG TGCTGCCGCT GGCGGACCTC GCGGCGGCGC AGGTGCCGGA TCTGCGGCTC
GCGCTCGCGC AGGAGCCCGG CGTGATCATC AACACCACGG GCGCGACCGG CGGGCAAAGC
TCGGTGCTGC TGCGCGGCGC GGCCTCCCAC CAGGTGCTCT TCATCGTCGA CGGCGTGCGG
ATGAACGATC GCTCCGCAGC GTATTTCAAT TTTCTCGGTG GCGCCGATCT CGCGGGACTC
GATCGCGTCG AGGTGTTGCG GGGCCCGCAG AGCACGCTTT ACGGCAGCTC GGCGATGGGC
GGCGTGATCC TGATGAACAC GACGCGCGGG GCCGGGGCGG CACACGGAGC GTTGAGCGCG
ACGGCCGGCA GCTTCGAGAC GTGGGGCGGT GGGGCGACCG TGCAGGGCAG CACGGGGAGT
TGGGGCTACA GTGGCGCGCT CTCGCGTTAC GCGACGGCGA ACGACGAGCC GTCGAACGAC
TACGAGCAGT GGAGTTATTC CACGCGGCAG GAGTGGATCG TCTCGCCGCT GCTGCTGGTC
GGCGCGACGT TGCGCGGCCA GCAAAGCGAG TTTCTCCAAA CCGGCTCGCG CGACTATCCG
GCGCCGGGCC GGATGAACGC GAGAAATCAC CTCGGAACTG TTTACGGTGA AGCGCGCGTC
GGCGACGACT TCGCCTCGCG GCTGACGCTC GCGCTGCATC GCCGTGGCTA CGACTGGACC
GATCTCTCGG GCAGTCCGTG GGCAATGAAT TCCAGGCTGC GCAACACACG CAAAATTCTC
GACTGGCAGA ACACGTGGCA GGCGTTGCCG GCGCTCGAGC TCGTCGGAGG GGCGAACTGG
GAGCGCTCGC GTTACGATGT GGAAGGCGTG CCGTCGCGCG ACGAGGTGCG CGCGGGGTAT
GTTTCGGCGA CGGCGCGGCC ACGCGAAGAT TTCACGGTCA CGGCGGGAGC GCGACGCGAC
GATTTCGACT CGGCTGGAGC CGCGACCACG TGGCGTATGG GCGTATCCTG GCTGGCCGCG
AAGGCGACGA AACTGCGCGC GACCTATGGC ACTGGGTTCA GCGCCCCGGG TTCCGACGAC
CGTTACGGCG TGCCGTCGTG GAACCAGCTG CCGAATCCGG AGCTGCGGCC GGAAAAATCG
CGCGGCTGGG ACGTCGGGCT CGACCAGACG TTCGCCCGCG CCGACCTGAC CGTCGGAGTC
ACGTATTTCC ACAATCGATT CCGGAATCTC TTCGAATGGC AGACGGTGGA TTGGACCACT
TATGCCGGCC AAACCGTGAA CCTGGCGCGC GCGGAGACGG AGGGCGTGGA GCTCGCTGCG
CGGGCGAAGC TGGGCGCGGC GGCGCAAGCG CGGCTCAGCT ACACTTACCT GGAGGCGAAG
GACTCGGCCA CGGGTCAGCG GTTGATCCGG CGGCCGCGGC ACAGCGGCGA CGCGGAGGTG
CGCGCACATC TCACCAAGGC TTGGCTCGTC GGCGTCGGCG TGCGGGTGGT GGCCGACCGC
ACCGAGTCGA CGGGGCCGTT TGAGGATTTT ACGACGGCCC GGGTTTTTGC GAGCTACACC
GTCCGCGACG ACCTGGAGCT GAAGGTGCGG ATCGAGAACG CTCTCGATGA AACCTACGAC
GAAGTGCGCG GCTACGCGTC GCTGCCGCGC GGCGTGTTCG GCTCGGTGGA ATGGAGATTC
TGA
|
|---|
| Protein sequence | MTPLPRRSRS SRLIPAFLLA LGALASARAQ FTLAGTSAIV LDDYVISASR TPQDPRYTPS
SVSVLPLADL AAAQVPDLRL ALAQEPGVII NTTGATGGQS SVLLRGAASH QVLFIVDGVR
MNDRSAAYFN FLGGADLAGL DRVEVLRGPQ STLYGSSAMG GVILMNTTRG AGAAHGALSA
TAGSFETWGG GATVQGSTGS WGYSGALSRY ATANDEPSND YEQWSYSTRQ EWIVSPLLLV
GATLRGQQSE FLQTGSRDYP APGRMNARNH LGTVYGEARV GDDFASRLTL ALHRRGYDWT
DLSGSPWAMN SRLRNTRKIL DWQNTWQALP ALELVGGANW ERSRYDVEGV PSRDEVRAGY
VSATARPRED FTVTAGARRD DFDSAGAATT WRMGVSWLAA KATKLRATYG TGFSAPGSDD
RYGVPSWNQL PNPELRPEKS RGWDVGLDQT FARADLTVGV TYFHNRFRNL FEWQTVDWTT
YAGQTVNLAR AETEGVELAA RAKLGAAAQA RLSYTYLEAK DSATGQRLIR RPRHSGDAEV
RAHLTKAWLV GVGVRVVADR TESTGPFEDF TTARVFASYT VRDDLELKVR IENALDETYD
EVRGYASLPR GVFGSVEWRF
|
|---|
| |