| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_3679 |
|---|
| Symbol | |
|---|
| ID | 6205210 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Opitutus terrae PB90-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010571 |
|---|
| Strand | + |
|---|
| Start bp | 4783025 |
|---|
| End bp | 4784029 |
|---|
| Gene Length | 1005 bp |
|---|
| Protein Length | 334 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 641693347 |
|---|
| Product | NADH ubiquinone oxidoreductase 20 kDa subunit |
|---|
| Protein accession | YP_001820556 |
|---|
| Protein GI | 182415490 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1941] Coenzyme F420-reducing hydrogenase, gamma subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.337597 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.48335 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCTAAAC CGAAAGTCGC GTTCTACTGG TGTGCCGCCT GCGGCGGTTG CGAGGAAGCC
ATCGTCGATT TCGCCGAGGA CATTCTCGGC GTGATCGAAG CGGTCGACAT TGTGTTCTGG
CCGGTCGCGA TGGATTTCAA GAAGAAGGAC GTCGACGCGC TCCCGGACCA AGGTATCACC
GCCACCTTTC TCAACGGCGC GATTCGCACC AGCGAGCAGG AGGAGATGGC GCAGCTGCTC
CGCCGCAAGA GCCAGTTCCT GATCGCGTAT GGCGCCTGTG CGCACCTCGG CGGGATTCCG
GGGCTGGCGA ACCAGTTCGA TCGCGAACAG CTGCTCAGCT ACGTTTACGA ACAGACGCCG
ACAATCGACA ACCCCACCCA CGTTCGGCCG CAACCGGCTC ACCAAAACAA CGGACATTCG
CTCACGCTCC CCGAGTTTCG CCACACCGTC CGCTCGCTCG ATCAGGTCGT CGCCGTCGAC
TACTACATCC CCGGGTGTCC GCCGACGCCG AAGATCACCA AGGCCGCCAT CACCGCCCTG
CTCGAAGGCA AGCTCCCGCC GCGCGGCAGC GTGCTCGCCC CCGATGTCGC GCTCTGCAAC
GAGTGCGCGC GCAAGCCGAG CAAGCCGGCC ACGCTGAGCT TCACCGAGTT CAAGCGCCCA
CACCTCGCCA AAATCGATCC CGACCTCTGC CTGCTCGCCC AAGGCTTCGT CTGCATGGGC
CCGGCCACGC GCGCCGGCTG CGAGGCGCTC TGCCCCGCTG GCAACATGCC GTGCACCGGC
TGCTTCGGGC CGACCTCTCG CATCCGGGAT CAGGGCGCAA AGATCCTCTC GTCCCTCGCC
GCCAACGCCG TCGCCAAAAC CGAAGCCGAA GCCGCCGCCG TGCTCGCCGG CATTCCCGAT
CCCGTCGGCA CATTCTACCG CTACGGTCTC GCGACCTCGA TCCTCCGCGG TCGGATCGAT
CGCCCCGCCC CGTCTCCGCA GTCCGTCAGC CCGTCCGCCT CATGA
|
|---|
| Protein sequence | MPKPKVAFYW CAACGGCEEA IVDFAEDILG VIEAVDIVFW PVAMDFKKKD VDALPDQGIT
ATFLNGAIRT SEQEEMAQLL RRKSQFLIAY GACAHLGGIP GLANQFDREQ LLSYVYEQTP
TIDNPTHVRP QPAHQNNGHS LTLPEFRHTV RSLDQVVAVD YYIPGCPPTP KITKAAITAL
LEGKLPPRGS VLAPDVALCN ECARKPSKPA TLSFTEFKRP HLAKIDPDLC LLAQGFVCMG
PATRAGCEAL CPAGNMPCTG CFGPTSRIRD QGAKILSSLA ANAVAKTEAE AAAVLAGIPD
PVGTFYRYGL ATSILRGRID RPAPSPQSVS PSAS
|
|---|
| |