| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_3476 |
|---|
| Symbol | |
|---|
| ID | 6205388 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Opitutus terrae PB90-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010571 |
|---|
| Strand | - |
|---|
| Start bp | 4520426 |
|---|
| End bp | 4521238 |
|---|
| Gene Length | 813 bp |
|---|
| Protein Length | 270 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 641693142 |
|---|
| Product | uroporphyrinogen III synthase HEM4 |
|---|
| Protein accession | YP_001820353 |
|---|
| Protein GI | 182415287 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG1587] Uroporphyrinogen-III synthase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.591559 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAAGAT CGTCTTCCTC CAACTCGTTG CACGGCCGTC GCATCATCGT CACCCGCGCG
CGCGAGCAGG CTTCCGAACT TTCCGCCAAG CTCACCGCGC TCGGCGCGGA GGTGCTCGAG
CTGCCGCTGA TCCGCGTGTC CAAGCACATC TCGAAAGAGG CGCTGGCCGA CGTGCTGCTC
GAACTCGGCA GCTACGACTG GATCGTCTTC ACCAGCGCCA ACGGCGTTCG GTATTTCTTC
GAGGAGTTCC TGCGGATTTT CGACGACATC CGCTCGCTTG GGCTGCTGCG GTTCGCGTGC
GTCGGCGACG CCACGGCCAA AGGCATTCGC GAGCTGCATC TCAAGGTGGA GTGTCAGCCG
AAGGTCGCCA CCGGCGAAGC GCTGGCCGAC GCGTTGATCG AGACCGGCAG CCTCGACAAC
GCGAAGGTGG TCGTGATCAC GGGCAATCTG AACCGCGATG TCCTGGTCAC CAAGCTCGAG
GGCGCGCACG CGATCGTGGA CCAGCTGCAG GTGTATCAGA CCGAGCGGGT GGATCTGACG
GATAACCCGG CCGCGGCCGA GTTTCGCACT CAGGGCGCGG ACGCGGTCCT GTTCGCGAGT
TCGTCGGCGG TGGATTCGTT TGCGGCGCAG CAGGCTGCGC TGACGCTACA GAAAGGTGCG
AAGCCGCCGC TGTTCGGCAG CATCGGCCCG CTGACCAGCG AGAGCCTGAC GAAAGCCGGG
CTGGAGATTG GTTTTGTGGC GAAGGAGCCG AACCTCGACA GCCTGGTGCA GGCACTGGTG
AAGAAGCTGG GCGCCCGCGA ATCACGCCAA TGA
|
|---|
| Protein sequence | MARSSSSNSL HGRRIIVTRA REQASELSAK LTALGAEVLE LPLIRVSKHI SKEALADVLL
ELGSYDWIVF TSANGVRYFF EEFLRIFDDI RSLGLLRFAC VGDATAKGIR ELHLKVECQP
KVATGEALAD ALIETGSLDN AKVVVITGNL NRDVLVTKLE GAHAIVDQLQ VYQTERVDLT
DNPAAAEFRT QGADAVLFAS SSAVDSFAAQ QAALTLQKGA KPPLFGSIGP LTSESLTKAG
LEIGFVAKEP NLDSLVQALV KKLGARESRQ
|
|---|
| |