| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_3417 |
|---|
| Symbol | |
|---|
| ID | 6204398 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Opitutus terrae PB90-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010571 |
|---|
| Strand | + |
|---|
| Start bp | 4452825 |
|---|
| End bp | 4454462 |
|---|
| Gene Length | 1638 bp |
|---|
| Protein Length | 545 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 641693082 |
|---|
| Product | Mu-like protein prophage protein gp29-like protein |
|---|
| Protein accession | YP_001820294 |
|---|
| Protein GI | 182415228 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG4383] Mu-like prophage protein gp29 |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.610061 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAGCACGG AATCGAACAC GGCCAATCCG TCCGGCGCGG CGCCGAGCGT GCACATCACG
CCGGAAATGG TGAAGAGCTA TCGCCGCTCG CGGCTCGCGC GCCTGCGGCT CACGCCCGAG
GTGCTGTCGC GCCAGCTCGA GCAGTTCGAC GCCGGCAGCC TGCGCGAGTT TGCGCTCACG
GCCGATGCGC TGCCGCGGCG CGACGATCGC ATCGCGGTCG CGTGGCCGAA GCGGTGCAAG
GCCGTCTCGC GGCGTGGCTA TGTCATCCAG ATCAACGACG GGCTCGAGGA CGCGACCAAG
GCCCGCGCAG AGCTGCACCA GGCCGCGCTC AAATACGCCT ACGACAACTG CACGGCCGCG
CATGCGCTCG ACCTCAACAA GCGCGGCGGC TGGCGGCTCC TGGCTCGGCA GATGATGGAG
GCGCTCGGCG TGCAATACGC CGTGCACGAG CTCGTCTTCC AGCCGCGCCT CGTCGACGGC
CGGCCGCAGA TGACGTTCAC CGCGCATCAC GTGCCGCTGT GGTTTTTCGA AAATTCCACC
GGCCGGCTCC GCTTTCTGCG CGAGCAATAC GCGCTCGAAG GCCAGCCGAT GGCAGACAAC
GAATGGCTCG TCACGGTCGC CGACGAGGCG CTGATGCAGC CGCTGGCGAT CGCCCGCTGC
TTCAAGCAAA TGTCGCTCGT CGACTGGCTG GCCTACTCGG AAAAATTCGG CATGCCCGGC
CTGCTCGGCA AGACCGGCGC GCAGAAGGAT TCGCCGGCGT GGGCCGCGAT GCAGGAAGCC
GTGGCCGACT TCGGCCAGGA GTGGGCGGCA GTGTGCAGCA CCAACGACAC GATCGACCTG
GTCGAAGCCG CCGGCGGGCA GAACATGCCT TATCCGACGC TCGTCGATCG CATGGACCGC
GCGATCGTGT CGATCTGCGT GGGCGGAGAT CTCTCGACGA TGAGCCAGCA GGGTGACGCC
GTCGGCGCGC TGCCGCAGGC GGAGGCCGCC GAGGCATTTG AGGAAGACGA TGCGCTCATG
ATCGAGGAAT CGGTGCGGCA GATCTCGCGC TTCATCATCC GCGAGCTCTT CGACGAGGAG
CCGCTGGCCT ACCTGCAGAT CGTCATCCCG AAGGCGAAGG ACGCCACGGT GACCAAGGCG
AAGATCGAGA TCCTGGTCGA TCGCGGGGTG CCAGTCGGCG CCGACTGGGC CCGGCAGGAG
CTGGGCGTGC CCGCGCCCGC CGACGGCGAA GCCGTGCTGC AGGCCAGCGC CGCGGCGGCG
CCGGGTTCCG GGTTCGGAGT TCCTGGGTTC GGCACTCAAC TCTCAGCTCT CAACCCTCAA
CTTTCCTCCA CCTTCGCGGC CGCCAATGCC GCCGAGGGCG CGCTGGGCAC GCTGTTCCGC
GACCGGGCCC TGGTCGCGCT CTCCGACGCC CAGCGCGAGC GGGCGGCGCC GCTCCTGGAG
CGGGTGGCCG CGCTCAAGCG CGCCGACACG CCGGCCGCCT ACGCCGCGGC GCTGCGCAAG
CTCCAGGCGG ATTTGCCCAA GCTGGCCGCT CCGATCCTCG CCGACCCCGT CCTTGCCAAG
GCCATCGAGC TTACCCTGGG CCCGGCCTTC GCCTCCGGGC TGGCCTCTGC CTCCACCCCA
AACGCTACCC AACGATGA
|
|---|
| Protein sequence | MSTESNTANP SGAAPSVHIT PEMVKSYRRS RLARLRLTPE VLSRQLEQFD AGSLREFALT
ADALPRRDDR IAVAWPKRCK AVSRRGYVIQ INDGLEDATK ARAELHQAAL KYAYDNCTAA
HALDLNKRGG WRLLARQMME ALGVQYAVHE LVFQPRLVDG RPQMTFTAHH VPLWFFENST
GRLRFLREQY ALEGQPMADN EWLVTVADEA LMQPLAIARC FKQMSLVDWL AYSEKFGMPG
LLGKTGAQKD SPAWAAMQEA VADFGQEWAA VCSTNDTIDL VEAAGGQNMP YPTLVDRMDR
AIVSICVGGD LSTMSQQGDA VGALPQAEAA EAFEEDDALM IEESVRQISR FIIRELFDEE
PLAYLQIVIP KAKDATVTKA KIEILVDRGV PVGADWARQE LGVPAPADGE AVLQASAAAA
PGSGFGVPGF GTQLSALNPQ LSSTFAAANA AEGALGTLFR DRALVALSDA QRERAAPLLE
RVAALKRADT PAAYAAALRK LQADLPKLAA PILADPVLAK AIELTLGPAF ASGLASASTP
NATQR
|
|---|
| |