Gene Oter_3306 details

Gene Information

• Locus tag: Oter_3306
• ID: 6208554
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Opitutus terrae PB90-1
• Kingdom: Bacteria
• Replicon accession: NC_010571
• Strand: +
• Start bp: 4331142
• End bp: 4331549
• Gene Length: 408 bp
• Protein Length: 135 aa
• Translation table: 11
• GC content: 61%
• IMG OID: 641692972
• Product: methylmalonyl-CoA epimerase
• Protein accession: YP_001820185
• Protein GI: 182415119
• COG category: [E] Amino acid transport and metabolism; [R] General function prediction only
• COG ID: [COG3185] 4-hydroxyphenylpyruvate dioxygenase and related hemolysins
• TIGRFAM ID: [TIGR03081] methylmalonyl-CoA epimerase

Plasmid Coverage information

• Num covering plasmid clones: 13
• Plasmid unclonability p-value: 0.369567
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 12
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGATCACCA AAATCGATCA CCTCGGCATC GCCGTCCGGT CCTTGGACGA AACGATTCCG 
TATTACGAGA AATCTCTCGG GCTCAAGTGC GAGCACCGCG AAGAAGTGCC GTCGCAGAAG 
GTTCGCACGG CGTTCTTCAC GGTCGGCGAA GTACACCTGG AACTGCTCGA GCCCACCTCG 
CCGGAAAGCC CGATTGCCAA GTTCATCGAG AAGAATGGCG AGGGCGTGCA CCACGTCGCG 
TTCGCCACGA CCGATATTCA CGCGCAGCTG AAGGGCGCGG CCGCCAACGG CGTCCGCCTC 
ATCAACGAAC AGCCTTTCGA AGGCGCCGCC GGCAAGCTCG TCGCCTTCCT TCACCCGAAA 
TCCACCCACG GCGTGCTGAC CGAATTCTGC GCGCCGAAAA CCAACTAA 

 

Protein sequence

MITKIDHLGI AVRSLDETIP YYEKSLGLKC EHREEVPSQK VRTAFFTVGE VHLELLEPTS 
PESPIAKFIE KNGEGVHHVA FATTDIHAQL KGAAANGVRL INEQPFEGAA GKLVAFLHPK 
STHGVLTEFC APKTN