| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_3228 |
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| Symbol | |
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| ID | 6204434 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Opitutus terrae PB90-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010571 |
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| Strand | - |
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| Start bp | 4216052 |
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| End bp | 4217743 |
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| Gene Length | 1692 bp |
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| Protein Length | 563 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 641692895 |
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| Product | glycoside hydrolase family protein |
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| Protein accession | YP_001820108 |
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| Protein GI | 182415042 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG3507] Beta-xylosidase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.00674596 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.0120766 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACTTCG TCCGTCCTCT GCTCGTCGCC ACTTTCCTCG CTACTGCCGC CGTCGATGGG
GCGCGGGCCG CGCCCGCGAG CTTCGACTGG TTCGAGTATA CCGGCCAGGA GTCGAGCGCC
GATGGCGAGC GTCCGCCAGC CGGCTATCGT AATCCGATCC TCACCGGTTT CTATCCCGAC
CCGAGCATCT GCCAGGTGGG TCAGGACTAC TACCTCATCA ATTCAACCTT CGCCTACTTT
CCCGGGATCC CGATCTTTCA CAGCCGTGAC TTGGTGAATT GGAAACAGCT CGGCCACGTG
ATCAATCGTC CGCAGCAACT GCCCTACGAC GGACTCGGCG TGTCGCGCGG ACTCTTTGCC
CCCACGATCA GTCATCACGA AGGCACTTTC TACGTCGCGT GCACGATGGC GGACGCCGGC
GGAAACTTCG TCGTGACCGC CTCGAACCCG GCCGGCCCGT GGTCCGATCC CACCTGGCTG
CACTTCGAGG GCATCGATCC GTCGCTCTTT TTCGACGATG ACGGACGTGC CTGGATGCTC
AACAACGGCG CGCCCGAAGG CACCCCGCTC TACGATGGCC ATCGCGCGAT CTGGATTCAG
GAGTTCGATC CTAGCGCGCG CAAAATGATC GGGCCGCGCA TGGTCCTCGT GAACGGCGGC
GTCGATATTT CACAAAAACC CGTCTGGATC GAAGGGCCCC ACATCTACAA ACACGGGGGC
TGGTATTACC TTTGCTGCGC CGAGGGCGGA ACGAGCGTGA ATCACTCCCA GGTGATCTTC
CGCAGCCGGA AAGTCGACGG GCCGTACGTT CCGTGGGCGC AGAATCCAAT TCTCACGCAA
CGTGGTCTCG ACGGGAAAGT GCCCGACGCG GTCACGTCGA CCGGCCACGC CGATCTCGTC
ATCGGTCCCG ACGGGCAATG GTGGTCCATT TTCCTTGGCG TACGCCCGTA TGAGGGGCGG
TTCTCGCCCA TGGGCCGCGA GACCTTTTTG TTGCCGGTGA CGTGGACCGA CGACGGCTGG
CCTCGCATCC TCGAGCCGGG CCGGCGCGTG CCGCTCGTGG CGCCGGCGCC CACCGGTTCG
CGCCTCCACT CTGAGCCGTC GTATTTGAAC GGCAATTTCA CCTGGCGCGA TGACTTCGAC
AAGGCCGGGT TGTCGCCGTT CTGGATCATG CTGCGCGCGC CGGTCGAATC CTGGTGGACG
TTGGCCAAGG GTCGTCTGGC GCTCGAACCG CAGGCGGAAG CTCTCTCAGG CCGGGGCAAC
CCGAGCTTCC TCGCCCGGCG GGTGCAACAC GCCCGATTCA CCGCGTCCAC CTCGGTCGCC
GTGCCGAGGG AAACCGGCGT CTCGGCCGGC CTCGCCGTCT TCCAGGGCGA GCGGTTCCAC
TACTTTCTCG CGGTCAAACG CGACGCGGAA GGCGTCACGC TCGGGCTCGA GCAGCTCCGC
GGTGGCCCGG CCGAAGTGAT CCGCTCTGTC CGGATCGATG CGGCATCTGA CGTGGCCCTG
CGGGTCGAGG CGCACGCCGG CACGTGTTCA TTCTCTTATG CGGTCCAACC GGGCTCCTGG
CAGGTCCTGG CCGCCGACGC CGATGCGAAA CTGCTGACCA CGGAGGTCGC CGGCGGGTTC
GTCGGCGCGA CCGTCGGGCT GCACGCGCGA AAAGAGGGTG ACGCGCGGCC GACGACGGCG
CCGGCGGATT GA
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| Protein sequence | MNFVRPLLVA TFLATAAVDG ARAAPASFDW FEYTGQESSA DGERPPAGYR NPILTGFYPD
PSICQVGQDY YLINSTFAYF PGIPIFHSRD LVNWKQLGHV INRPQQLPYD GLGVSRGLFA
PTISHHEGTF YVACTMADAG GNFVVTASNP AGPWSDPTWL HFEGIDPSLF FDDDGRAWML
NNGAPEGTPL YDGHRAIWIQ EFDPSARKMI GPRMVLVNGG VDISQKPVWI EGPHIYKHGG
WYYLCCAEGG TSVNHSQVIF RSRKVDGPYV PWAQNPILTQ RGLDGKVPDA VTSTGHADLV
IGPDGQWWSI FLGVRPYEGR FSPMGRETFL LPVTWTDDGW PRILEPGRRV PLVAPAPTGS
RLHSEPSYLN GNFTWRDDFD KAGLSPFWIM LRAPVESWWT LAKGRLALEP QAEALSGRGN
PSFLARRVQH ARFTASTSVA VPRETGVSAG LAVFQGERFH YFLAVKRDAE GVTLGLEQLR
GGPAEVIRSV RIDAASDVAL RVEAHAGTCS FSYAVQPGSW QVLAADADAK LLTTEVAGGF
VGATVGLHAR KEGDARPTTA PAD
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