| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_3094 |
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| Symbol | |
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| ID | 6207787 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Opitutus terrae PB90-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010571 |
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| Strand | - |
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| Start bp | 4029134 |
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| End bp | 4030693 |
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| Gene Length | 1560 bp |
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| Protein Length | 519 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 641692759 |
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| Product | putative PAS/PAC sensor protein |
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| Protein accession | YP_001819974 |
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| Protein GI | 182414908 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG2208] Serine phosphatase RsbU, regulator of sigma subunit |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.259313 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACACGC TGCCGGACCG GATCTACTTC AAAGACCTGG AGAGCCGATT CGTGCGCGTG
AACGAGGCCT ACGCGCGGTG GCACGGCTTC GATTCGCCGG CATCGATCAT CGGCAAGACC
GACCACGATT TGTTCGCGGC GGTGCACGCC GACGTGGCGC GCACGGAAGA GGAAGCAATC
ATTCGCACGG GCGTGCCCAT GGTGGCCAAG GTCGAGAAGC TCACGATGAA GGACGGCAGC
GTAGCCTGGG GCTCGGCCAC GAAGATGGCG TGGCGCGACG AATCCGGGCG GATCATCGGC
ACCTTCGGCG TCACGCGCGA CGCCACCGCG GCCAAGCTGG CGGAGGAGCG GCTCGTCGAA
GAGCGGAACC TGCTGCGCAC GATCATCGAT CACCTGCCGG CGCGCGTCTA CGTCAAGGAC
ACCGCGTCGC GCTACCTGCT CAATAATGTC GCACACCTCG CCATGCTCGG ACTCGAGGGC
CAGGAACAGG CCACCGGACG AACCATTCTC GACTTCTTCA GCAACGAGCG CGGCCGGCAG
GCGTTCAGTG ACGACCGGCA GGTGCTCGAG ACGGGCACGC CGATCCTCAA CCAGGAAAAG
TCCGACTTCG GCGCCGGCAG CCAGCTCCAC TGGTCGCTCA CGACCAAGGT GCCGCTGCGC
GATCTCGAGC AGCACATCAT CGGCCTGGTC GGAATCAGCC ACGACATCAC GCGCCGCAAG
CTGGCCGAAG AGGAGCTGCA ACGCCGCACC AACGAAATGG AGGCGGACGT GCGCATGGCG
CGCCAGGTAC AGGAAACGTT TCTCCCGCGC GCGTATCCGG TTTTTCCGCG CGGCGTGCCG
GCCGAGGCGA GCGCGCTGCG CTTCGCCCAC CGCTACATTC CCGCGACGAC GCTCGGCGGC
GATTTCTTCG ACATCGTGCA GCTCTCCGAC ACGAAATGCG GCGTCCTGGT GTGCGACGTG
ATGGGCCACG GCGTGCGTGC CGGTCTGCTG ACAGCGCTGA TTCGCGGCGT CGTCGGCGAA
CTGGGCGAAC GCGCGGAAAA TCCCGCGCAC GTGCTCGCCG AGATCAACCA CAGTCTCGCG
CCGATCCTCG AGCGCACCGG GCAGCCGGTG TTCGCCACGG CCTTTTTCGG CGTGTTCGAC
ACGACCACGA ACACCCTCTC CTACGGCAAC GCCGGCCACC CCTCGCCGCT GATCCGCCGC
GCCGCGACCG GCACGGTCGT GCGGCTGTCG TCGGAGGACC CCGAGCCCGC GGCCGGACTG
GTGGCCAACT TCGGCTACAC GCGCCGCGAG TGCACGATCG AACCCGGCGA TCTCTTCCTC
GGCTACACCG ACGGCGTCAT CGAAGCGCCC GATGCCGCCG GCCAGATCTA CGGCGATAGC
CGGCTGATCG GATTCCTGCA GGACAGCATC GGCCAGAGTG GCGAGGAAGT CTGCGCCCGA
TTGGTGCGGG ACCTCGCGAC GTTCTCGGGC CATTCGATCT TCGAGGACGA CGTCTGTCTC
GTGACGCTGG AGTGCACGGG CCTCGTTTGC CCCGTGCAGA CGGTGTCGTA CGAAATCTAG
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| Protein sequence | MDTLPDRIYF KDLESRFVRV NEAYARWHGF DSPASIIGKT DHDLFAAVHA DVARTEEEAI
IRTGVPMVAK VEKLTMKDGS VAWGSATKMA WRDESGRIIG TFGVTRDATA AKLAEERLVE
ERNLLRTIID HLPARVYVKD TASRYLLNNV AHLAMLGLEG QEQATGRTIL DFFSNERGRQ
AFSDDRQVLE TGTPILNQEK SDFGAGSQLH WSLTTKVPLR DLEQHIIGLV GISHDITRRK
LAEEELQRRT NEMEADVRMA RQVQETFLPR AYPVFPRGVP AEASALRFAH RYIPATTLGG
DFFDIVQLSD TKCGVLVCDV MGHGVRAGLL TALIRGVVGE LGERAENPAH VLAEINHSLA
PILERTGQPV FATAFFGVFD TTTNTLSYGN AGHPSPLIRR AATGTVVRLS SEDPEPAAGL
VANFGYTRRE CTIEPGDLFL GYTDGVIEAP DAAGQIYGDS RLIGFLQDSI GQSGEEVCAR
LVRDLATFSG HSIFEDDVCL VTLECTGLVC PVQTVSYEI
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