| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_2846 |
|---|
| Symbol | |
|---|
| ID | 6208854 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Opitutus terrae PB90-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010571 |
|---|
| Strand | - |
|---|
| Start bp | 3632588 |
|---|
| End bp | 3633565 |
|---|
| Gene Length | 978 bp |
|---|
| Protein Length | 325 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 641692510 |
|---|
| Product | transketolase central region |
|---|
| Protein accession | YP_001819727 |
|---|
| Protein GI | 182414661 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0022] Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.00429271 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.065717 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCGTCA TTTCCTACCG CGAAGCCGTC CGCCACGCCC TGGCCGAAGA GCTCGAACGC
GATGCGAACG TCGTGATCAT CGGCGAAGAA GTCGGCCAGT TCAACGGCGC CTACAAGGTC
ACCGAAGGCC TGTTGGAAAA ATTCGGTCCC AAGCGCGTCG TCGACACCCC AATCAGTGAG
GCGGCGTTCA TCGGACTCGG GGTCGGAGCC TCGATGCTCG GCGTCCGCCC GGTGGTGGAG
CTGATGTTTT GGTCGTTCTA TTCCGTCGCT TTCGACCAGA TTCTTAACAA CGCGGCGAAC
GTCCGCTACA TGTCCGGCGG GCTGATCAAC TGCCCCATCG TGATCCGCGG CCCGGCAAAC
GGCGGCACGA ACGTCGGTGC GACGCACTCG CACACGCCGG AAAACGTCCT CGCCAACCAT
CCCGGCGTAA AGGTCGTCGT ACCCGCCACC GCCTATGACG CGAAGGGCCT GCTCAAATCG
GCGATCCGCG ACAACGACCC GGTGATGTTT TTGGAGAACA CGATTCTCTA CGGCGAAAAG
GGCGAGGTGC CGCCGGACGA GTACCTGATC CCGCTCGGCA AGGCGGATAT CAAGCGGCCC
GGCAGCGACC TGAGCATCGT GACCTACGGC CGCTCCGTGC TGCACGCGCT GAAGGCCGCC
GAGCAGCTGA CCAAGGAGCA CGACATCTCC GTCGAGGTGG TCGACCTGCG CACGATCCGA
CCGCTCGACA TCGACACGGT GCTCGCCTCC GTGGCGAAGA CGCACCGCGT GCTGATTGTC
GAGGAGCAGA AGCCGTTCGC CAGCGTCGGT TCCCAACTCG CCTACATGAT TCAACGCGAG
GCGTTCGATG AACTCGATGC GCCGATCCAT CGCGTAGCGA CGATCGACGC GCCGTCGATC
TACAGTCCGC CGGTCGAAGT CGAACAACTC CCGAACCCGC AGCGCGTGCT CAAGGCCGCG
CTGGAAGTCC TCGCCTGA
|
|---|
| Protein sequence | MPVISYREAV RHALAEELER DANVVIIGEE VGQFNGAYKV TEGLLEKFGP KRVVDTPISE
AAFIGLGVGA SMLGVRPVVE LMFWSFYSVA FDQILNNAAN VRYMSGGLIN CPIVIRGPAN
GGTNVGATHS HTPENVLANH PGVKVVVPAT AYDAKGLLKS AIRDNDPVMF LENTILYGEK
GEVPPDEYLI PLGKADIKRP GSDLSIVTYG RSVLHALKAA EQLTKEHDIS VEVVDLRTIR
PLDIDTVLAS VAKTHRVLIV EEQKPFASVG SQLAYMIQRE AFDELDAPIH RVATIDAPSI
YSPPVEVEQL PNPQRVLKAA LEVLA
|
|---|
| |