| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_2723 |
|---|
| Symbol | |
|---|
| ID | 6207977 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Opitutus terrae PB90-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010571 |
|---|
| Strand | - |
|---|
| Start bp | 3481760 |
|---|
| End bp | 3482734 |
|---|
| Gene Length | 975 bp |
|---|
| Protein Length | 324 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 641692384 |
|---|
| Product | oligopeptide/dipeptide ABC transporter, ATPase subunit |
|---|
| Protein accession | YP_001819604 |
|---|
| Protein GI | 182414538 |
|---|
| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0444] ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component |
|---|
| TIGRFAM ID | [TIGR01727] oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.601642 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.451475 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCTCTGC TGACGGTCAC CGATCTCCGC ACCACCTTCC ATACCCGCAC AGGCGTTTAT
CGGGCGGTGG ACGGAGTGAG CTTCTCCGTC GAGCGCGGAG AAACACTCGG TATCGTCGGC
GAATCCGGTT CGGGTAAATC CGTCACCTGC TACTCGCTAC TGGGGCTGGT GCCGCAGCCG
CCCGGCCGCA TCGAAAGTGG CACGGCGGTC TTCGACGGCA TCGACCTGCT GCACAGCCCG
ACGGCCCAAG TACGCGCGAT TCGCGGCAAG CGCATCGCGA TGATCTTTCA GGACCCGATG
ACCTCGTTGA ATCCGTATCT CCGGATCTCC GAGCAGCTCA TCGAGCCGCT GTTGATTCAC
GAACGAATCT CCCGCCGCGC CGCCCTGTCG CGCGCGCAGG CCACGCTCGA ATCCGTCGGC
ATCCACGATG CCGCACGCCG CCTGCACGGT TATCCGCACG AGTTTTCCGG CGGCATGCGT
CAGCGGGTAA TGATCGCGAT GGCGCTCATC ACCAAGCCGG AGTTGCTGAT CGCGGACGAG
CCGACGACCG CGCTCGACGT CACGGTGCAG GCGCAGATTC TGGAGCTGAT CAAGTCAATG
CAGCGCGAGC TGGGCATGGC GGTGATTTTC GTCACCCACG ACCTCGCCGT CGTCTCCGGG
CTCTGCGACC GCGTGCAGGT GATGTATGCC GGTCGTATCG TCGAGGCGGC TGACACGCGC
ACGCTCTTCT ACTCCCCACG TCATCCGTAC ACGCGCGCGC TGCAGCGCTC GATTCCGGCG
CTGCAGCCGA AGGGCGCGGC GCTCTACACG ATTCCCGGGC TGCCGCCCGA TCTCTCCAAA
CCGCTGCCCG GTTGCCCGTT CGCGCCGCGC TGCGAATTCG TTCGCGACAA GTGCGTGGCC
AATGTGCCGC CGTTGCTCGA AGTCGCACCC GGGCACGCGC ACGCCTGCCT CCGCGCACAA
CAAGGGGAAA TATAG
|
|---|
| Protein sequence | MPLLTVTDLR TTFHTRTGVY RAVDGVSFSV ERGETLGIVG ESGSGKSVTC YSLLGLVPQP
PGRIESGTAV FDGIDLLHSP TAQVRAIRGK RIAMIFQDPM TSLNPYLRIS EQLIEPLLIH
ERISRRAALS RAQATLESVG IHDAARRLHG YPHEFSGGMR QRVMIAMALI TKPELLIADE
PTTALDVTVQ AQILELIKSM QRELGMAVIF VTHDLAVVSG LCDRVQVMYA GRIVEAADTR
TLFYSPRHPY TRALQRSIPA LQPKGAALYT IPGLPPDLSK PLPGCPFAPR CEFVRDKCVA
NVPPLLEVAP GHAHACLRAQ QGEI
|
|---|
| |