Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Oter_2000 |
Symbol | |
ID | 6208882 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Opitutus terrae PB90-1 |
Kingdom | Bacteria |
Replicon accession | NC_010571 |
Strand | - |
Start bp | 2569614 |
End bp | 2571944 |
Gene Length | 2331 bp |
Protein Length | 776 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 641691650 |
Product | TPR repeat-containing protein |
Protein accession | YP_001818883 |
Protein GI | 182413817 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG5010] Flp pilus assembly protein TadD, contains TPR repeats |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.597232 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.450618 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGTCACTCT CCCCGCCCAC CGTCCGGCCT TCGCTTCTCA CCGCGGCGGT GTGCTGCGTG CTTTTCGCCT GCACCGTGCT GCTGTTCAGC CGCGGGCTGA GCTACGACTT CAGCAACTAC GACGATCCCG CCTTCGTGAC GAACAACGTC CACGTTCAGG CCGGCTTCAC CAAGGAGAGC CTCGCCTGGG CCTTCACCGG ACAGGCGGAC TACTGGCATC CGCTCACGTG GCTGTCGCAC ATGCTCGACT GGCAGTTGTG GCGCGACAAC GCCGGCGGAC ATCACCTCAC CAGCGTCCTG TGGCACGCGC TGAACGCCGT GCTCGCGTTC CTCGTGCTGC GGCGGTTGAC CGGCGCGCCG TGGACGTCCG CGTTCGCGGC GGCCCTGTTC GCGTGGCATC CCTTGCGCGT CGAGTCGGTG GTGTGGATCA CCGAACGCAA AGACGTGATG AGCGGCTGCT TTTTTCTGCT CACGCTCTGG GCGTTCGCGG CCTATGCGCA GCGCCGTGAT GCTCACAGCG GCCGGTCCCT GCGTCCGTCG CAAACCGACC CGCACGCCGT TCCGGCGGAG GCGCACCTGG GTGCGCCCTC GATCCCATCC GCGCCTGCGC GCCCCTGGCC ATTTTATCTG CTCACGCTCG GGCTGTTTCT CGCCGGGCTG ATGTGCAAGC CGATGCTCGT GACGCTGCCG GGCGTGCTCT TTCTACTCAA CGTCTGGCCG CTGCGCCGCC TCGATCTGAG CGTGCTCGAT CGCGCCATGT GGCGCCGCAC CGGCCAGCTG TTGTTGGAAC AGGTGCCGCT GCTCGCGCTC TCGCTCGCGA TCGCCACGGT GACCGTGCTT ATGCAGCAGA CGCAGGGCGC GTTCGTCCTC GATTTGCCGT TCGGCGCGCG GCTCGGCAAC GCGGTCGTGT CGATCGCCCG CTATCTCGGC AAGTTCCTCT GGCCGGCCAA CCTCACTGTC TGCTATCCGC ATCCCGGTCA CTGGCCGTGG CTCGTCATCA TGGGCGCGAC CGCGCTCGTG GTTGTCGTAA CCGCCGTCGC CTGGTGGCAG CGTCGCGCGC GGCCATGGGT ATTGGTCGGC TGGGCCGGCT TTCTCGTCGC GCTGCTCCCC GCGCTCGGAC TCATCCAGGT CGGATTCCAA GCGATGGCCG ACCGCTACAC CTACGCGCCG ATCCTGCTCC TGCAGCTCGC GCTGCTCTGG ACTCTCGCCC CGCTGCTCGC CGCGCGACCG TTCGCGCGTA AAACCGCGGC GGTGACCGCC GTCGCGGTAC TGCTCGGCGG TGCGATCCGC ACGTGGGAGC AACAAGCGGT GTGGCGCGAT CCAACGACCC TTTTCCGGCA CGCGCTCGCG GTCACCGAGC GCAACGAGGT CGGACACGCG CTACTCGCTT ACACGCTCGC GACGCAGAGC GAGTTGGAGG AAGCGGCCAT CCACAGCCGC CGCGCACTCG AGCTGAATCC GCGCAACCGG ACGGCGCTGT TCACCCTCGC CAGCGTGCTC GAACGTCAGG GCCACGCCGG CGACGCCGCC GAGCTTTACC GCCGCGTGCT GGAGCTGAAC CCGAAGGACA GCGACACCGA GTATCGACTC GGATTACTCC TGCTGCGCCA GCGCGACCCC GGGGCGCAGC AACATCTCCA CGCCGTGGGC CAGAGACATC CCGAGCTCGT GCAGCAACGC ATCGCCGAAG GCATGGACCA CACGCTGCAC GGACGCGCAC ACCTCGGACT CGCCCAGTTC GAGGTCGCGC TCGCGCTCAA TCCGGATGAA CCGGCCGCGC ATTTCGGCGC TGGGCTGGCG CTGGCCCAGC TGGACCGCGA CGACGACGCG ATCACTGCGC ATCGCAACGC GCTCCGGCTG CGCGCCGACT ATCCGGAAGC GCACACCGAA CTCGGTCTCC TGTTGCTCAG CCGCGGTGAG CCCGCCGAGG CCGAGACGCA TTTTCGCGCC GCCCTCCGCT CCGCGCCCGA ACTCGCGACA GCGCACCTCG GACTCGCGCG GGCGGCGGAG CAGCTGGGCC GGGCTGACGA AGCAACGGCG AGTTTCACGC GCGCCGTGGA GCTGGCGCCC GACAGCCCGC TCGTGCAGCG AACGGCCGCC CAGGCCTTCG CGCGGCGGCA GCAGTTCGCC GCCGCCGTGG AGCACTACCA GCGCGCCATC GAGCTGCAGC CACAGGATGC CGCGCTTCGC GCCGAGCTCG GCTATGCGCT GATTCTCAGC GGTCGCCGCG CGGATGGCAT TGCGGCGTGG AAAGCCGCGC TCGCGCTCGA CCCCACCCTG CCCGGCCTGC GCGAGCGGCT CGACCGGCTC GAACGAACCG AGGCGCGATA G
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Protein sequence | MSLSPPTVRP SLLTAAVCCV LFACTVLLFS RGLSYDFSNY DDPAFVTNNV HVQAGFTKES LAWAFTGQAD YWHPLTWLSH MLDWQLWRDN AGGHHLTSVL WHALNAVLAF LVLRRLTGAP WTSAFAAALF AWHPLRVESV VWITERKDVM SGCFFLLTLW AFAAYAQRRD AHSGRSLRPS QTDPHAVPAE AHLGAPSIPS APARPWPFYL LTLGLFLAGL MCKPMLVTLP GVLFLLNVWP LRRLDLSVLD RAMWRRTGQL LLEQVPLLAL SLAIATVTVL MQQTQGAFVL DLPFGARLGN AVVSIARYLG KFLWPANLTV CYPHPGHWPW LVIMGATALV VVVTAVAWWQ RRARPWVLVG WAGFLVALLP ALGLIQVGFQ AMADRYTYAP ILLLQLALLW TLAPLLAARP FARKTAAVTA VAVLLGGAIR TWEQQAVWRD PTTLFRHALA VTERNEVGHA LLAYTLATQS ELEEAAIHSR RALELNPRNR TALFTLASVL ERQGHAGDAA ELYRRVLELN PKDSDTEYRL GLLLLRQRDP GAQQHLHAVG QRHPELVQQR IAEGMDHTLH GRAHLGLAQF EVALALNPDE PAAHFGAGLA LAQLDRDDDA ITAHRNALRL RADYPEAHTE LGLLLLSRGE PAEAETHFRA ALRSAPELAT AHLGLARAAE QLGRADEATA SFTRAVELAP DSPLVQRTAA QAFARRQQFA AAVEHYQRAI ELQPQDAALR AELGYALILS GRRADGIAAW KAALALDPTL PGLRERLDRL ERTEAR
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