| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_1855 |
|---|
| Symbol | |
|---|
| ID | 6206353 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Opitutus terrae PB90-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010571 |
|---|
| Strand | - |
|---|
| Start bp | 2304965 |
|---|
| End bp | 2307562 |
|---|
| Gene Length | 2598 bp |
|---|
| Protein Length | 865 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641691503 |
|---|
| Product | permease |
|---|
| Protein accession | YP_001818738 |
|---|
| Protein GI | 182413672 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0577] ABC-type antimicrobial peptide transport system, permease component |
|---|
| TIGRFAM ID | [TIGR03434] Acidobacterial duplicated orphan permease |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTCGATC GGATTCGCGC GCTGCTGTTC CGCTCGCGAA TTGATCGCGA GATGAACGAG
GAGCTGCGCG CGCATCTCGA ACGCGAGACC GAGCAGAACC TTGCACGCGG GCTGCCGCCG
GACGAGGCGC GCTACGCCGC GCTGCGCGCG TTCGGCGGTG TCGAGCAGCT CAAGGAACGC
GAGCGCGAGG CACGCGGCGG ACTCTGGATT GACCATACGT TGCGCGATCT TCGCATGGCG
CTCCGCCAGC TCGTCAAGGC CCCCGGCTTC GCGCTCGCCG CCGTGCTCAT CCTCGGGATC
GGCATCGCGG GCAATACGGT GGTTTTCAGT TTGGTAAACG GGATCTATCT GCGACCGATT
CCGTTTCCGC AGCCGGAGCA GCTCGTCGAT ATCGATATCA CCGCACCGAA GTGGAATCTC
GTGTACACGG GAATCAACTA CGATGCGTTC GAGGCGTGGC GGCAGGAGAA TCAGACCTTC
GCCGGCATGG CCCACTGGCG GGGCGGCGCT TTCAACCTCG CCATCGCCGG CCGCAGCGAG
CACCTCCCCG GCCAGCAGGT CACCCACGAT CTCGCTGAGG TCTTCGGGGT GCAGCCCGCG
CTCGGCCGGA TGTTTCGCGC CGACGAGGAG CTGCGCGGTG GACCGAAAAT CGCCTTGATC
GGCTATCACC TCTGGCAGGA ATGGTTCGCC GGCGACCCGG CCGTCATTGG CAAGACGATC
ACCGTCGATT CCGAACCGCA TGAAATCATC GGCGTGCTGC CGCCGACCGC CGTGTTTCCG
TCGCGCGCCG CCGTCTGGCT GCCGTTTGCG GAAAAACCCA ACCGGCAGGG CTGGGCGGGC
AACGCGATCG GCCGGCTGAA GCCCGGCGTC ACGGTCGAAC AGGCGAGTGC GGATCTGCTC
CGCATCCATC GCGCTCACAT TCCCGACGCG AAGGAGTACG AAGTCACCTC GCCCGTGGTG
CAGCCGCTGC TCTGGCGATA TCTCGGCCGC GACCGCACGA TCGGCGTGGT GCTGCAGGGC
GCGGTGCTGG TGCTGCTCCT GATCGCCGGC GCCAATATCG CCGGGCTGGT GCTGGCGCGG
ACGCTCGCGC GCCTGCCGGA ACTCGGATTG CGCGCCGCGC TCGGCGCCTC CCGGTTCCAA
TTGCTGCGCC AGCTTCTGGT CGAGAGCATC GTGTTGGCGG CGCTTGGTGG AGCGGCCGGA
CACTTGCTCG GTCGCTGGTT GCTCGCCGGC GCGCTCCGGC TGTTTCCCGA CCTGCCAGCG
TGGAGCCGCT TCGACATGGA CTGGCGGTTC GCGGCGTTCA TCATCGGCCT CACCGCACTC
GGCGTACTCG TCGCGGGGCT GATCCCCGCG CGCCACGTGC TCAGCCGGGT CGACGTGCGC
AGCGTGATGG GGCCGGCGGC GCAGCAGGCC ACTCACCCGG CGAGCCGGCT GGCCACCTTG
CGAATACTCG TGGTCGGCGA GATCGCGCTC GCGCTGCTGC TGCTGTTCGT CGCTGGCTTG
TTGGGCCGGG CGTTTCTGCG GGTGCAACAG ATCAATCCCG GCGTTCAGCC CGAGCGGCGG
CTCATCTACG GACTGTCGCT GCCCTCGGCC GCGTATCGCG ACAATGCTTC CCGCCTCGCC
TTCTTCGAAC AACACCTCGC CCGGTTGCGG GCTCTGCCCG ACGTCGAGGC CGCGAGCGTT
TCCACCATCC TGCCTTTTTC GGGCACGCAT TCCGGCAGCT TTTTTGAACC GGAAGGCGGC
TTGCCTGGCG GGCCGGACGC AAAGTCGCCG GTCATCCTCA CGCGCATCTG TATGCCGGAA
TACTTCGCAA CGATCGGCAT TACCTTTGCT GCGGGTCAAG GGTTCACCGA GCAGAACTGG
CACTACAAGA TCATCGTCAA CGAGACGCTC GCGCAGCTGT TCTGGCCGGG GCAGAACGCC
GTCGGCAAAC GGATGCGTTC CCGCGGCAGC AACGATCCGT GGCTCGAGGT CGTCGGCGTC
GCCCGCGACG TCCGCCACTA TGGACTCGAG CGTGAGGTGC GCCCGGGCGT GTACGTGCCT
TTCCATGCCA TGCCGCAGGC AGCCGCCGGA GTCGTCGTGC GCACCCGGGG CGAGCCGGAA
GCGCTCGCTC CCACCGTGCG CACGTTGCTG CAGGAGCAGG ATCCGTCGCT GCCGCTGATG
GGCATCAGCA CGTTGGAGAA GATGATTGGG CAATCGCTGT TCCTCCGCCG GATGTATTCC
GGCATGACCG TCCTCTTCGC GCTGGTCGCC GTCGCGATGG CGATGGCCGG GCTCTACGGC
ATCGTCGCCT ACGTCGTGGG TCAGCGCACA CGCGAGTTCG GCATCCGGCT CGCGCTGGGC
GCGCCGCTGC GCGAGCTGTT GCGGCTCGTG CTGCGCGAGG GCGCCCGGCT GGCCGCCGCG
GGATTCGGGT TCGGCATTCC CGCCGGCATC CTGGCGGGGT TCGCGCTTTC CCGGCTGCTT
TACGGCATCC GGCCGTGGGA CCCGCTGACT ATCGTCGCCG CGACCTTGCT GCTGGGATTG
ATCGTCGGCT GCGCGTGCCT GGCGCCCGCC CGCCGCGCGG CCCGGGTCAA TGTCATCGAG
GTGCTGCGCA ACGAGTGA
|
|---|
| Protein sequence | MLDRIRALLF RSRIDREMNE ELRAHLERET EQNLARGLPP DEARYAALRA FGGVEQLKER
EREARGGLWI DHTLRDLRMA LRQLVKAPGF ALAAVLILGI GIAGNTVVFS LVNGIYLRPI
PFPQPEQLVD IDITAPKWNL VYTGINYDAF EAWRQENQTF AGMAHWRGGA FNLAIAGRSE
HLPGQQVTHD LAEVFGVQPA LGRMFRADEE LRGGPKIALI GYHLWQEWFA GDPAVIGKTI
TVDSEPHEII GVLPPTAVFP SRAAVWLPFA EKPNRQGWAG NAIGRLKPGV TVEQASADLL
RIHRAHIPDA KEYEVTSPVV QPLLWRYLGR DRTIGVVLQG AVLVLLLIAG ANIAGLVLAR
TLARLPELGL RAALGASRFQ LLRQLLVESI VLAALGGAAG HLLGRWLLAG ALRLFPDLPA
WSRFDMDWRF AAFIIGLTAL GVLVAGLIPA RHVLSRVDVR SVMGPAAQQA THPASRLATL
RILVVGEIAL ALLLLFVAGL LGRAFLRVQQ INPGVQPERR LIYGLSLPSA AYRDNASRLA
FFEQHLARLR ALPDVEAASV STILPFSGTH SGSFFEPEGG LPGGPDAKSP VILTRICMPE
YFATIGITFA AGQGFTEQNW HYKIIVNETL AQLFWPGQNA VGKRMRSRGS NDPWLEVVGV
ARDVRHYGLE REVRPGVYVP FHAMPQAAAG VVVRTRGEPE ALAPTVRTLL QEQDPSLPLM
GISTLEKMIG QSLFLRRMYS GMTVLFALVA VAMAMAGLYG IVAYVVGQRT REFGIRLALG
APLRELLRLV LREGARLAAA GFGFGIPAGI LAGFALSRLL YGIRPWDPLT IVAATLLLGL
IVGCACLAPA RRAARVNVIE VLRNE
|
|---|
| |