Gene Oter_1652 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagOter_1652 
Symbol 
ID6206740 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameOpitutus terrae PB90-1 
KingdomBacteria 
Replicon accessionNC_010571 
Strand
Start bp2026842 
End bp2027357 
Gene Length516 bp 
Protein Length171 aa 
Translation table11 
GC content65% 
IMG OID641691294 
ProductECF subfamily RNA polymerase sigma-24 factor 
Protein accessionYP_001818536 
Protein GI182413470 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAGGATG TCGATGACCA CACGTCTTGG GCAGAATGGT TTCAGCTTCA CGGCTCCAGG 
CTGCTGCTGT GCGCCCGGCA ATGGACGCCC TCGCTGGCGG ACGCCGAGGA CGTGGTTCAG
GAAGGATTCG TTCGCTACTG GAAACATCAG CGGCATTTGG GCGGAGATCC CTTTGCGCTG
GTGCTTACGT CGGTGCGGCG CGCGGCATTG GATCGTGCGC GGAGCGACGC ACGGCGGGCG
CAACGCGAGG ATCACTATGG CCAGGAAGGA AGTGGGGACG CGCCGTTCTT CGCCGTTGGC
GCTGAGGCCG ATGAACGCAC CCGCGCGGTG GAAGCGGCGC TGCGACAGCT GCCGGCCGAG
CAGCGCGAGG TCCTCGTACT CAAGCTCTGG GGCGAACTCA CCTTCGCCGA GATCGCTCGG
GAGTTGGACC TTTCGCCCAA CACCGCGGCC TCGCGCTACC GCTATGCGCT CGGAGCGCTC
AAGGAGCACT TGACCGCTGC TGATTGCCAT GGATGA
 
Protein sequence
MEDVDDHTSW AEWFQLHGSR LLLCARQWTP SLADAEDVVQ EGFVRYWKHQ RHLGGDPFAL 
VLTSVRRAAL DRARSDARRA QREDHYGQEG SGDAPFFAVG AEADERTRAV EAALRQLPAE
QREVLVLKLW GELTFAEIAR ELDLSPNTAA SRYRYALGAL KEHLTAADCH G