Gene Oter_1350 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagOter_1350 
Symbol 
ID6206607 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameOpitutus terrae PB90-1 
KingdomBacteria 
Replicon accessionNC_010571 
Strand
Start bp1670541 
End bp1672841 
Gene Length2301 bp 
Protein Length766 aa 
Translation table11 
GC content70% 
IMG OID641690991 
ProductTPR repeat-containing protein 
Protein accessionYP_001818235 
Protein GI182413169 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG3063] Tfp pilus assembly protein PilF 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCTGACG CCCGCTCCTC TGCTCCGCCG CTGCCCGCCC GGCGCGGGGG CGCGCGTCGC 
TGGCTGGGGT TCGGCGCGGC GCTGCTGGCG CTGGTGGCGT TCGTCTATGC GCCGACGTTG
TCCGCGCCGT TTCACTTGGA CGACGCGGAG TCGATCGTGG GCAATGCGAC GCTCCGCGAT
TTCTGGTCGT TCGCGTGGGC GAAGCCGCCG GCCACCGGCG GCGAGACGGT GAGCGGCCGG
CCGGTGCTCA ACTTCACGTT TGCGCTCAAC CAAGCCTGGG GCGGACTCGA CGTGCGTGGT
TATCATGTCG TCAACGTCCT GATCCACGCG CTCGCCGCGC TCGTGCTGTT TGGCGTGGTG
CGGCGAGGCC TCGCCTTGGC CCGCGGCCGC GCCGCGAAGA GCGCGGTCGC TCCTGTCTCC
GCGACGACGC TGGCCGGCGA ATGTTCGTAC TACGAACATT GGCGGGAGAG TGGGATCGCG
TTTTTCGTGG CGGCGCTGTG GGCGGTACAT CCGCTGCAAA CGAGCGCGGT AAGCTATGTC
GCACAACGCG CCGAGTCGCT GGCGGGGCTG TTTTATTTGC TGGTGCTGTA TGGGTTCATC
CGCGGCGCGG AAGCGGCTGG CTCCGGCGGT GGTGCCGTGG TTCAGGTTCA CAGGCGCGAT
GCCCGTGCCC CGGCAACGGG TGCACGATGG TTCACGTTCT CGGTTGCAGC CTGTCTGCTC
GGCGTGGGCA CGAAAGAGAC GATCGTCACG GCGCCGCTCG TGGTGCTGCT CGCGGATCGC
GCATTCGTGA CCGGCGGCTT TGCTGCGGCG TGGCGCGCGC GCCGGCGGTA TTACCTCGCG
CTTGCTGCCA CTTGGCTCGT GCTCGGCGCG TTGGTGGTGG CAAATCGCGG CCGTGGCGGT
TCGGCGGGAT TCGGTGCGAG CATCACCTCA TGGGAATATC TGGTGACGCA GGCCGGGGCG
GTCGGGCACT ACTTGCAATT GGTGTTTTGG CCGACGGGGC AGGTATTCGA CTACGGCGTG
GCGCTCGCGC CGCTGGCGGC GGTGTGGCCG CAAGCGCTGC TCCTGCTCGG GCTCGCGGGC
GTGGGGTTCT GGCTGCTCGC GCGCAACCAG GCGGGTGGTT TTCTGATCGC GAGCTTTTTC
CTTCTCTTGG CGCCGAGCTC GAGTCTCGTG CCGATCGCCA CGCAGACTGT GGCCGAGCAT
CGGATGTATT TGGCGTCGGC GGTGGTGATC GCGGCGGTCG CGTTCGGATG CTGGCGCGCG
ATGCAGCGGC TGGCCTCGTC GCGGACTGGC GCTTGGGTCA CGAGTGCCGC TCTGGGAGCG
GCGGTCCTGG CGCTGGGAGT GGCGGCCCAT GGGCGCAACC AGCTCTATCG CTCGGAGCTC
GCGCTCTGGC AGGACACGGT GGCGAAACGG CCGGACAATC CCCGCGCTCA TCACAACTTC
GGACTGGCGC TCGCCGCCGC CGGGCGGAGC GACGAAGCGA TGGCCGAGTT TCGTCGCGCG
ATCGCGCTGC AGCCGAACCA TGTTTTTGCG CATACCCAGC TCGCATTGGC GTTGCTCGAT
CGCGGCGAAC CGGAGGCGGC GAGCGCGCAT TTCCGCGCCG CGTTGGCGGC TGATCCGAGC
TATGCCGCGG CGCGGGTGAA TCTCGGCCGC GCGCTGGCGC GGCTCGGTCG CACCGACGAG
GCCGCGACGG AATACGAGGC GGTGCTCCGC GCTGAGCCGG GGGCCGTCGA TGCGGGCACC
AATCTCGCTG CGCTACTGCT GGCACGCGGT GAGACCGAGC GCGCGGCCGC GCTGCTCGCC
GCGGCAACCG CCGCGGCCCC CGCGCTGGCG GAACCACATT ACCACTACGG GCTCGCGCTC
GAGCAGTTGG GTCGGATCGC TGAGGCCGAA AGCGCGTTGC GTCAGGCCAC CGAGCTGAAG
CCGGACTGGG CCGAGCCGTG GCTGGCCCTG GGGAACGTGC TCGCGCGGCG CGGCGAGGCG
GAGCCGGCGG AGCGCGCCTA TCGTTCCGCG CTCCACCTCG CACCGCGAAC CGCGGCGGCG
CACTATGGCT TGGGCAACCT GCTCGCGCAG CGGCGCAATT TTCGCGCAGC GATGGAAGAG
TTCCAGGCGG TGCTGGCAAT CGATCCCGCC CATGTGCCGG CGCGCAACAA TCTCGGCAAC
TGCCAGCTCG TGACCGGTCA GCTGCGCGAA GCCGTCGCGA CGTACGAGGA AGTGTTGCGG
GCGCGACCGA ACGATGCCGC CGTCGAGCGG AACCTCGCCC TCGCGCGGGA ACTGCTGCGC
AGCGGCGGGC ACGGGCCCTA G
 
Protein sequence
MPDARSSAPP LPARRGGARR WLGFGAALLA LVAFVYAPTL SAPFHLDDAE SIVGNATLRD 
FWSFAWAKPP ATGGETVSGR PVLNFTFALN QAWGGLDVRG YHVVNVLIHA LAALVLFGVV
RRGLALARGR AAKSAVAPVS ATTLAGECSY YEHWRESGIA FFVAALWAVH PLQTSAVSYV
AQRAESLAGL FYLLVLYGFI RGAEAAGSGG GAVVQVHRRD ARAPATGARW FTFSVAACLL
GVGTKETIVT APLVVLLADR AFVTGGFAAA WRARRRYYLA LAATWLVLGA LVVANRGRGG
SAGFGASITS WEYLVTQAGA VGHYLQLVFW PTGQVFDYGV ALAPLAAVWP QALLLLGLAG
VGFWLLARNQ AGGFLIASFF LLLAPSSSLV PIATQTVAEH RMYLASAVVI AAVAFGCWRA
MQRLASSRTG AWVTSAALGA AVLALGVAAH GRNQLYRSEL ALWQDTVAKR PDNPRAHHNF
GLALAAAGRS DEAMAEFRRA IALQPNHVFA HTQLALALLD RGEPEAASAH FRAALAADPS
YAAARVNLGR ALARLGRTDE AATEYEAVLR AEPGAVDAGT NLAALLLARG ETERAAALLA
AATAAAPALA EPHYHYGLAL EQLGRIAEAE SALRQATELK PDWAEPWLAL GNVLARRGEA
EPAERAYRSA LHLAPRTAAA HYGLGNLLAQ RRNFRAAMEE FQAVLAIDPA HVPARNNLGN
CQLVTGQLRE AVATYEEVLR ARPNDAAVER NLALARELLR SGGHGP