Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Oter_1124 |
Symbol | |
ID | 6205196 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Opitutus terrae PB90-1 |
Kingdom | Bacteria |
Replicon accession | NC_010571 |
Strand | - |
Start bp | 1397309 |
End bp | 1398535 |
Gene Length | 1227 bp |
Protein Length | 408 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 641690767 |
Product | RND family efflux transporter MFP subunit |
Protein accession | YP_001818012 |
Protein GI | 182412946 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0845] Membrane-fusion protein |
TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.360909 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCTCTTT TTTCGCGTCC GCGTTTTCGC TGGTTCCTCT ACGTCGCCGT CGTGCTCCTG ATGGGATTCG GCACGTGGTA TTTTGCGTTG CGCTCGAAAC CTGAGCGCCC GCGTTACCCA CAACCCGAGT GGGCCGGCAA CACCTGGCCC CCGCTGATCC CGGTCCGCAC CGTCACCGCC GAAAAACGCG ATCTCCCGGT GCACTTGAAG GCGATCGGCA CGGTGACACC GCTCAACACC GTGACGGTGA AGGCGCGGGT CCCCGGTCAG CTGCTGCGCA TCGCGTTCGA GGAAGGCCAG CGCGTCGAAC GCGGCCAGGT GCTCGCCGAG ATCGATCCGG CGCCTTACCG CATCGTGCTC GCCCAGGCCG AAGGCCGGCT GCAACAGGCG ATGGCCCAGC TCGAAAGCGC CCGCAGCGAT TTCGAACGGA CCACCAACCT GCACCGACAA AACCTGGTCA CCGACCAACA GCTGCAACTG CAGGACGCCC TCGTGGCCGA ACGCGCCGGC GCCGTCGCCA CCGCGCAGGC GCAGGTCGAG GATGCGCGGC TCCAGCTCAG CTACACGCGC GTCGAGGCGC CCATCGCCGG CCGCGCCGGT CTCCGCCGCG TCGACGTGGG CAACCTGATC CGCGAAGGCG ACACCAACGG TCTCGTGGTC CTCACCCAGA CCCGGCCGAT CACCGTGACG TTCACCATTC CCGAGGTCGA CCTCCAGTCG GTGCTCGATC CTTTCCGCGC CGGCGAGTCA CTCGTCGTCG AGGCGTGGGA CCGCCGCGAA ACCGCCGTGC TCGCCACCGG CGTGCTCAAA ACGCTCGACA ACCAGATCGA TACCGCCACC GGCACGCTGA AGCTCAAGGC CGAGTTCGCG AACGAGGACG AGCGGCTGTT TCCCAACCAA TTCGTCAATG TCCGGCTGCG CGTCCGCACG CTGGAGCAGG CTGTCGTCAT TCCCGCGGCC GCGGTGCAGT TCGGCTCGCG CGGCACGTAT GTTTATCTCG TCGATGCCGA CAAAAAGGCG GCGATCCGCG ACGTCGTGCT CGGGCCTGTC GACGGTTCCG AGCAGGCCAT CACCAAGGGG CTCGCGCCCG GCGATCAGGT CGTGCTCGAG GGACTCGATC GTCTCCGCGA GGGCCGCGGC GTGATCGTGA CCAACGACCC CGCTTCCGCG GCTCCGGCCG CTCCCGCCGC CGCCAGCAAC GGCAACGCGA AAGCCGCCAG GAAATGA
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Protein sequence | MSLFSRPRFR WFLYVAVVLL MGFGTWYFAL RSKPERPRYP QPEWAGNTWP PLIPVRTVTA EKRDLPVHLK AIGTVTPLNT VTVKARVPGQ LLRIAFEEGQ RVERGQVLAE IDPAPYRIVL AQAEGRLQQA MAQLESARSD FERTTNLHRQ NLVTDQQLQL QDALVAERAG AVATAQAQVE DARLQLSYTR VEAPIAGRAG LRRVDVGNLI REGDTNGLVV LTQTRPITVT FTIPEVDLQS VLDPFRAGES LVVEAWDRRE TAVLATGVLK TLDNQIDTAT GTLKLKAEFA NEDERLFPNQ FVNVRLRVRT LEQAVVIPAA AVQFGSRGTY VYLVDADKKA AIRDVVLGPV DGSEQAITKG LAPGDQVVLE GLDRLREGRG VIVTNDPASA APAAPAAASN GNAKAARK
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