| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_1004 |
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| Symbol | |
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| ID | 6204803 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Opitutus terrae PB90-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010571 |
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| Strand | - |
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| Start bp | 1234459 |
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| End bp | 1236270 |
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| Gene Length | 1812 bp |
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| Protein Length | 603 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 641690627 |
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| Product | general substrate transporter |
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| Protein accession | YP_001817892 |
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| Protein GI | 182412826 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2814] Arabinose efflux permease |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.00016386 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGTCCACCT CGCCTGCACC TGTTGTGATC CCCGACAACC GCAAGAGCGG ATACAATCGC
TTCCTGCTGC TCGTCGCCGG CCTGGGCGGC CTGCTCTACG GCGTCGATGT CGGCATCATT
GCCGGCGCCT TGCCGTATCT TGAGGCCACA TCCGGGCTCA ATGCCGGCCA GCTCTCGTTC
ATCGTCGCCG CGGTGCTGCT CGGCAGCGTC ATCTCGACGC TGTTCGCCGG ATTGCTCGCC
GACTGGCTTG GCCGCAAACC GCTGATGATC GCGAGCGGCG TGCTCTTCGT CGCGAGCATC
CCGATGATCG CTCTCGCCGA CGGCTACGTG CCGCTGGTGC TGGGCCGGCT GCTGCAAGGT
GTCAGCGCGG GCCTGATCGG GGTCGTGGTC CCGCTGTATC TCGCGGAGTG TCTGGGCGCC
GCTCACCGCG GGAAGGGCAC CGCGATTTTC CAATGGTTGC TGACCCTCGG CATCGTCGCC
GCCGCGGCCA TCGGCATGTA CTTCAGCATC CGCGTCGAGG ACGTCGCGCG GCTCGGCTCG
CCCGCGGAAC TGTTCGCCTT CAAGGACCAG GCGTGGCGCA GCATCTTCTG GGTCTCGCTG
CCACCCGGCG CGCTCTTCGT GCTCGGCGGT TTTCTGGTGG CGGAGTCTCC GCGCTGGCTG
TTCCGCCGCG GCCGCACCGA CGCCGCACGC ACCGCGCTGC TGCGTTCCCG CTCCGACGAG
CAGGCGACGA TCGAGCTGCA GGAAATGGCC GCGACGATCG CCGCCGAAAA AGCTCAGGCC
GCCACCGCCG GTGCGCGCGT GCGCGAATCA CTGCTGCGCC GCAAATACGT CGTGCCCTTC
GTGCTCGCCT GCGTGATCCT CGCCTGCAAC CAGGCCACCG GCGTCAACTC GATCATCGGT
TACAACACGA CGATCCTGCT GCAGAGCGGC CTGTCCGACG TGCAGGCCCA CTGGGGCTAC
CTCATCCTCA CGCTCGTCAA CTTCCTCGTC ACGATCGGTG CCGTCGTGCT GGTCGATCGC
AAGGGCCGGA AGTTTCTCCT CTCGCTGGGC AGCGCCGGCA TTATCGTGTC GCTGGTGTTC
GTCGGGCTGA TGTTCCGCCA ACCGGAGTCG CGGCGCGTCG ACGTGCGCGA AGCGGTCCAA
GCCACCGTGT CGATCGAACA AACAGCGACA GTGCCGTTCA ACACTGCGAC GCTGCCAACG
CTGCTGGCGA CCGCCGGTGA AGCCGGCCGG GCGATCGCAC GCGGTCCGGC GACACTGGTG
GTGATTTATT CCTACGGCGA CTTTCGCACC GCCACCAAGG CCGTGCGCTC CGATGACCCC
GCCGCGGCGC CGCTTGAGCT GACCCGCGCC GGTTGCGTGC CGCCCAACAA GGTCGTCGCC
TTCTTCTCGA ATCCGTTCGC CGATCTCGCC ACCGCCCGCA CCGCTCCGCT GAAAATCGAG
AATGCACTGA TCACACCGGT GCCGACGGAG CGTCACGGCT GGCTGACGGC CATCGGCATT
TTCACGTTCA TGGCGTTCTT CGCCGTCGGC CCGGGCGTGT GCGTCTGGCT CGCGTTATCC
GAGCTGATGC CAACGCGGAT CCGTTCCAAC GGGATGAGCA TCGCGCTGCT CATCAACCAG
GGGGTGTCCA CGACCATCGC GGCCGTATTC CTGCCCACCG TCGGCCGGTA CGGCTACTCG
ACGATCTTTT TCCTCTTCGC CGGTTGCACC GTCGTCTACT TCGTCACCGC CACGTTCCTC
TTGCCGGAAA CCAAGGGCAA GACGCTCGAG GAAATCGAAG CTCACTTCAG TCGCCGCGGA
AAAAAGGCCT GA
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| Protein sequence | MSTSPAPVVI PDNRKSGYNR FLLLVAGLGG LLYGVDVGII AGALPYLEAT SGLNAGQLSF
IVAAVLLGSV ISTLFAGLLA DWLGRKPLMI ASGVLFVASI PMIALADGYV PLVLGRLLQG
VSAGLIGVVV PLYLAECLGA AHRGKGTAIF QWLLTLGIVA AAAIGMYFSI RVEDVARLGS
PAELFAFKDQ AWRSIFWVSL PPGALFVLGG FLVAESPRWL FRRGRTDAAR TALLRSRSDE
QATIELQEMA ATIAAEKAQA ATAGARVRES LLRRKYVVPF VLACVILACN QATGVNSIIG
YNTTILLQSG LSDVQAHWGY LILTLVNFLV TIGAVVLVDR KGRKFLLSLG SAGIIVSLVF
VGLMFRQPES RRVDVREAVQ ATVSIEQTAT VPFNTATLPT LLATAGEAGR AIARGPATLV
VIYSYGDFRT ATKAVRSDDP AAAPLELTRA GCVPPNKVVA FFSNPFADLA TARTAPLKIE
NALITPVPTE RHGWLTAIGI FTFMAFFAVG PGVCVWLALS ELMPTRIRSN GMSIALLINQ
GVSTTIAAVF LPTVGRYGYS TIFFLFAGCT VVYFVTATFL LPETKGKTLE EIEAHFSRRG
KKA
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