| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_0232 |
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| Symbol | rpoB |
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| ID | 6207703 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Opitutus terrae PB90-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010571 |
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| Strand | - |
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| Start bp | 260485 |
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| End bp | 264264 |
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| Gene Length | 3780 bp |
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| Protein Length | 1259 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 641689853 |
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| Product | DNA-directed RNA polymerase subunit beta |
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| Protein accession | YP_001817123 |
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| Protein GI | 182412057 |
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| COG category | [K] Transcription |
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| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
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| TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.200123 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCGATC GCAACCACTC TGAACGTATC AACTTCGGCA AGCTCCGCGA AGTCCTGCAG
CCGCCGAATC TCATCGAGAT TCAAATCACG TCCTACCTCG ACTTCCTGCA GAAGGGCGTG
CCCGAAAAGC AGCGCAAGCC GCAGGGCTTG GAGGCCGTTT TCCGCGAGGT CTTCCCAATT
CTGTCCTATG ACGAGCGGCT GACGCTCGAA TACGTCTCCT ACACGCTGGG TGACCCGAAG
AATACGGAGA TCGAGTGTCT CCGCGAAGGC ATCACCTACT CCGTGCCGCT CTACGTGAAG
CTGCGGCTCC GCGAGGAAGA CTTCATCAAG GACGAGGAAA TTTACATGGG CGAGATCCCA
ATGGTGACCG AGCGCGGCTC GTTCATCATC AACGGCGCCG AGCGCGTCGT GGTCTCCCAG
CTGCATCGTT CGCCGGGCAT TGCCTTCGAG GTGACGCCGC ATCCGAACGG CAAACCGCTG
CACTCCTTCC GCATCATCCC CGATCGTGGC ACCTGGCTCG AGGTTCAGTT CGACAACAAC
GATCTGCTCT ACGTCTACCT CGATCGCCGC CGCCGCCGCC GGAAGTTCCT CATCACGACC
CTGCTGCGCG CCATCGGCTA CAGCTCCGAC ATCGACCTGC TGAATCTCTT CTACGAGATC
AAGGACCTCA AGGTCTCCAA GGCGCTCGAT ATGGAGAACG TCTCCACGCT CGTGCTCGTC
GAGGACGCGA TCGACGCCCA GAAGGGCGTG GTCCTCGCAC GCGCCTTCGA GCCGCTCACA
AAGGCGATCG TCCGCACCTT CGAAAAGCAC GACATCACCA CGCTGCGCGT GATCGACACC
GCCGCCGACG AAGGCGCGAT CATCCGTGCG CTGAAGAAGG ATCCGACGCG CAACGAGGAG
GAAGCGCTGA AGGAAATCTA CAAGCGCCTC CGCCCGGGTG AGCCGCCGAC CACGGCGAAT
GCCAAGGCGC TGCTGAAGCG GCTGTTCTTC GATCCGAAGC GCTACGACCT CGGCCGCGTC
GGCCGCTACA AGGTCAACCA GAAGCTCGGC CTCAAGGTCG ACCTGGAGCA GCGCATCCTC
GAGTCTGGCG ACGTCGTCGC TGCGACGAAG TATCTCGTCC GGCTAAAGAA GGGTGAGGGC
GTGGTCGACG ATATCGACCA CCTCGGTTCC CGCCGCGTCC GCACTGTCGG CGAACTGCTC
GCCAACCAGT GCCGCGTGGG GCTCAGCCGC ACCGAGCGGC TCGTCCGCGA ACGTATGACG
ATGTACGATC AGAGCGTCGA CTCGATCACG CCGCAGAAGC TGATCAACCC GAAGGCGCTC
ACCACCGTCA TCCGCGACTT CTTTGCCCGT TCGCAGCTGT CGCAGTTCAT GGATCAGATC
AACCCGCTCG CGGAGGTCAC GCACAAGCGC CGCCTCTCCG CGCTTGGGCC GGGCGGTCTG
AACCGCGAAC GCGCCGGCTT CGAAGTCCGC GACGTGCATC CGTCGCACTA CGGCCGCATC
TGCCCGATCG AGACCCCGGA AGGTCCGAAC ATCGGTTTGA TCAACTCGCT TTCGACCTAC
GCCCGCGTCA ACGAATTCGG CTTCATCGAA ACGCCGTATC GTACCGTCAA GGACGGCCGG
GTCACGGACA AGATCGAATA CCTCACCGCC GACCAGGAAG AGGGCAAGAT CATCGCCCAG
GCCAACGCCG AGATCGATGA GAAAGGCCAC TTCATCGGCA AGGTGACCTC GCGGCAGGAC
GGCAACTTCA TCGAAGTGCC GGCCGCCGAC GTGCACCTGA TGGACGTCTC GCCGAAGCAG
GTCATCTCGA TCGCCGCCGG CATGATTCCG TTCCTCGAGC ACGACGACGC GAATCGCGCG
CTCATGGGCG CGAACATGCA ACGCCAGGGT GTGCCGCTGC TCCAATCGGA GGCGCCGTTC
GTCGGCACCG GCATCGAGGA GCGCGTCGCG CGCGACTCGA AGATCGTCGC CGTCGCCGAA
GAGGCCGGCG TGGTCGCGTC CGTCGACGCG AAGCGGATCG TCATCACCCG CGACGGCGAA
ATGCCGCGCA ACCTGAAGAC CGACCCGAAG AATGGCGTCC ACGTTTACGA GCTGCGGAAG
TTCATGCGCT CGAACGCGGG CACGTGCTTC AACCAGAAGC CGGTCGTCAA GCAGGGCCAG
AAGGTGAAGA CCGGCCAGGT CATCGCCGAC GGTCCGTCCA CCGATCACGG TGAGATGGCG
CTCGGTCGCA ACGTGCTCGT CGCGTTCATG CCGTGGAACG GCTACAACTT CGAAGACGCG
ATCCTGATTT CCGAGAAGGT CCTCAAGGAG GACATCTTCA CCTCGATCCA CATTCAGGAA
TTCGAGGTCA CCGCCCGCGA CACCAAGCTC GGGCCCGAGG AAATCACCCG CGACATTCCG
AACGTCGGTG AAGAGGCGCT CAAGAACCTC GATCACAACG GCGTGATCCG CATCGGTGCC
GAGGTGAAGC CTGGCGACAT CCTCGTCGGC AAGATCACCC CGAAGTCCGA GACGGAACTC
GCACCTGAGG AAAAGCTGCT CCGCGCGATC TTCGGCGAAA AGGCCGCCGA CGTGAAGGAC
ACCTCGCTCG TCGTCCCGTC CGGCGCCGCT GGCATCGTGA TGGACGTGAA GGTCTCCTCA
CGCGTCGACT TCGAGAAGGA GAAGCTCTCG CCCTCCGATC GCCGCCGCCA GGTGAAGCAG
ATCCAGGAGG AATACAAGAC GCAGATGGAC AAGCTCCGCG AGGGCCTGAC CGAAGCGCTG
TCGAACATCC TCCTCGGCGA AAAGATTCCG CTCGACGTGA TCAACGGCGA AACCGGCGAA
ATCATCATCC CGGCCAACCG CAAGATCACC AAGACGCTGC TGCGCAAGCT CGCGGCCGTG
TCCAAGCACG TCCAGATCGA CCCGTCGCCC GTGCGGATCA AGATCATGGA GATCATCGGC
TCGTATCAGA CGAAGTTCGA CGAGCTCGAG ACTGATCGTG AGCGCAAGAT CGGCGGCATC
GAGTCTGGTG CCGACGCCGG CGACGGCGCG ATCAAGCAGG TCAAGGTTTA CATCGCCGAG
AAGCAGAAGC TCGAGGTCGG CGACAAGATG GCCGGCCGCC ACGGTAACAA GGGCGTGGTC
GCCAAGATCG TCGCCGAGGA AGACATGCCG TTCCTCCCGG ATGGCACGCC GATCGAAATC
TGCCTCAACC CGCTGGGCGT GCCTTCGCGC ATGAACGTCG GACAGGTGCT CGAGACCCAT
CTCGGCTGGG CGTGCAAACG CATCGGCCTG AAGGTCGCGA CGCCCGTGTT CGACGGCATC
CCCGAAAAGA AAGTCCGCGA ATACCTGAAG GAGGCCAAGC TGCCGTCCTC GGGCAAGAGC
GTGCTTTCCG ACGGCCGCAC CGGCGAGCGT CTCGATCAGG AGGTCGTCGT CGGCTACATC
TACATGATGA AGCTGAACCA CCTCGTGTCG CACAAGATTC ACGCGCGCGC GGTCGGTCCC
TACTCGCTGG TCACGCAGCA ACCGCTGGGC GGCAAGGCCC AATACGGCGG TCAGCGCTTC
GGCGAAATGG AAGTGTGGGC GCTCGAAGCC TACGGCGCGG CGCACACGCT CCAGGAACTC
CTCACCGTCA AATCCGACGA CGTCCAGGGA CGCACCAAGA TCTACGAGTC GCTCGTCAAG
GGCGACAACA CGCTGCAGGC CGGCACGCCC GAGTCCTTCA ACGTGTTGAT CAAGGAAATC
CAGTCCCTCG GTCTCGACAT CAAGCTCAAC AAGAGCGACG CCCTGGGCTT TGGCACGTGA
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| Protein sequence | MADRNHSERI NFGKLREVLQ PPNLIEIQIT SYLDFLQKGV PEKQRKPQGL EAVFREVFPI
LSYDERLTLE YVSYTLGDPK NTEIECLREG ITYSVPLYVK LRLREEDFIK DEEIYMGEIP
MVTERGSFII NGAERVVVSQ LHRSPGIAFE VTPHPNGKPL HSFRIIPDRG TWLEVQFDNN
DLLYVYLDRR RRRRKFLITT LLRAIGYSSD IDLLNLFYEI KDLKVSKALD MENVSTLVLV
EDAIDAQKGV VLARAFEPLT KAIVRTFEKH DITTLRVIDT AADEGAIIRA LKKDPTRNEE
EALKEIYKRL RPGEPPTTAN AKALLKRLFF DPKRYDLGRV GRYKVNQKLG LKVDLEQRIL
ESGDVVAATK YLVRLKKGEG VVDDIDHLGS RRVRTVGELL ANQCRVGLSR TERLVRERMT
MYDQSVDSIT PQKLINPKAL TTVIRDFFAR SQLSQFMDQI NPLAEVTHKR RLSALGPGGL
NRERAGFEVR DVHPSHYGRI CPIETPEGPN IGLINSLSTY ARVNEFGFIE TPYRTVKDGR
VTDKIEYLTA DQEEGKIIAQ ANAEIDEKGH FIGKVTSRQD GNFIEVPAAD VHLMDVSPKQ
VISIAAGMIP FLEHDDANRA LMGANMQRQG VPLLQSEAPF VGTGIEERVA RDSKIVAVAE
EAGVVASVDA KRIVITRDGE MPRNLKTDPK NGVHVYELRK FMRSNAGTCF NQKPVVKQGQ
KVKTGQVIAD GPSTDHGEMA LGRNVLVAFM PWNGYNFEDA ILISEKVLKE DIFTSIHIQE
FEVTARDTKL GPEEITRDIP NVGEEALKNL DHNGVIRIGA EVKPGDILVG KITPKSETEL
APEEKLLRAI FGEKAADVKD TSLVVPSGAA GIVMDVKVSS RVDFEKEKLS PSDRRRQVKQ
IQEEYKTQMD KLREGLTEAL SNILLGEKIP LDVINGETGE IIIPANRKIT KTLLRKLAAV
SKHVQIDPSP VRIKIMEIIG SYQTKFDELE TDRERKIGGI ESGADAGDGA IKQVKVYIAE
KQKLEVGDKM AGRHGNKGVV AKIVAEEDMP FLPDGTPIEI CLNPLGVPSR MNVGQVLETH
LGWACKRIGL KVATPVFDGI PEKKVREYLK EAKLPSSGKS VLSDGRTGER LDQEVVVGYI
YMMKLNHLVS HKIHARAVGP YSLVTQQPLG GKAQYGGQRF GEMEVWALEA YGAAHTLQEL
LTVKSDDVQG RTKIYESLVK GDNTLQAGTP ESFNVLIKEI QSLGLDIKLN KSDALGFGT
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