| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | OSTLU_47051 |
|---|
| Symbol | GTC3501 |
|---|
| ID | 5004920 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ostreococcus lucimarinus CCE9901 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009366 |
|---|
| Strand | + |
|---|
| Start bp | 333686 |
|---|
| End bp | 336715 |
|---|
| Gene Length | 3030 bp |
|---|
| Protein Length | 1007 aa |
|---|
| Translation table | |
|---|
| GC content | 57% |
|---|
| IMG OID | 640420341 |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_001420659 |
|---|
| Protein GI | 145352666 |
|---|
| COG category | [B] Chromatin structure and dynamics
[K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG5406] Nucleosome binding factor SPN, SPT16 subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.00853126 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.000628668 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | GCGCGGATGC GGTGCCTGTA CGAGACGTGG CGCGCGGAGC GAGACGGGGC GTTCGGCGGG
GCGAGCGCGC TGGTGGTCGG GACGGGGGCG AACAAGGAGG ACGACTTGCG GTACCTGAAG
GCGGTGGCGC TGGAGGTGTG GTTGTTTTCG TACGAGCTGC CGGACACGCT GTTGATGTTC
ACGGAGCGCG GGATGCACGT GGTGGCGGGA GGGAAAAAGG CGGCGCTGAT GGAGAACGCG
CGGGAGGTGC TGAAGGAGGA GTGCGGGTTG GATCTCGCGG TGCACGTCAA GCCGAAGGGC
GAGGACGGCG CGGCGCAGGC GGCGGCCGTC GTCGAGGCGA TTAAGAGCGA GAATCTGGTG
GTTGGGATGG TGATGAAGGA GAAGAACGAG GGTGCGATGA TGCAATACGT GACGAAGGCG
CTCGGGGAGG CTGGGATGGA AATTAAGGAT GTCACGAGCG GCGTGTCGCT CGCCATGGCG
GCCAAGGATG AAAAGGAGCT CGGTTTCGTG AATAAGGCGG TGACGCTAAC GAGCAAGGCT
TTGGGGTTCG CGGTGAAGGA GATGGAGGCC ACGATCGAGG ACGAAAAGAA GTTGACGCAC
GCCAAGTTGT CGGAGATGAC GGAGGATGCG ATTATCGATC CGTCGAGACT CGGTTTGAAA
TTCCCGCCAG AGGACGTGGA TATTTGCTAT CCTCCGATTT TCCAATCTGG TGGCGAGTAC
GACTTAAAAT ACAGCGCAGA GAGCGCGAAC ACGAAGCTTC ACTACGCTTC CCCGCCCGCG
GTGGTGCACA TGTCCGTCGG CGCTCGATAC ACGCAGTATT GCGCGAACGT CGGTCGCACG
TACATGGTTG ATCCGACGCC CGCGCAGGAG GCGACGTACG CCGCTATTCT CGCCGCGCAA
GAGGCGGGTA TCGCCGCTCT CGTCGATGAT GCGACGTGTG CGTCCGTGTA CGAAGCTGTC
AAGTCCTCTC TGACGAGTGC GGAAGGCGTC GACGGCGCGA CGTTAGCTTC AAAGTTGAAC
AAAAATGTCG GCACCGCCAT GGGTCTCGAA TTCCGCGACA TGACTTTTGT GTTGAATGGC
AAGTGCGAAA CCAAAATCAA GGCTGGTATG TTGTTTAATC TCGCCGTCGG TGTGCAAGGC
TTGAAGGAGC CGAGCGCCAA GGAAGGTAGT AAGAATGAAA CGTACGCCGT GATGATCGCC
GACTCTGTCT TGGTGGGCGC CGCGGGCGAG ACGCCGTCAG TGTTGACCAC GAACCCAAAG
GGCGTCAAGG AGATCTCTTA CATCATGAAC GACGATGATG ACGACGACGA CGACGAAGAA
GCCGAGGTCC AAATCAAACA AGGGGGCGTC ATCATGGATG CGAAGACTCG CGCCGAGCAA
TCCGGTCCGA GCTCGGCGGA GGATCGCGAG CGTCGTCAGC GCGCGTTGGC GGACAAAAAG
AATGCCGAAA CGTACAAACG ATTGACGCAA GCGGGCGAAG AAGAGATTCA AAACGCCACT
ATGGGCTCAT CCGCAGAATT TGTCGCGTAC AAGTCCATGC GTGAAGTCCC GACGCCGAAG
AACAAAGAGC TCGTTCTCGC CGTCGACCAA GAGCGCGAAA CCGTCCTCGT GCCGATTTAC
GGTCAGCTCG TGCCTTTTCA CGTCATGTCG GTCAAGTCTG CCTCAGTGAG CCAAGATGCC
GGTGCTGCGT TTATTCGTAT CAACTTTCAG CATCCCACCG GTTCAGGGGC GGTGGCGGTA
CAAAAGTACG CGGCGGCGGC GCGATTTCCG AACTCCATCT TTTTGAAGGA GGTGAGCTTT
CGCAGCACGG ACGCGCGTCA CGCCAACCAC GTGGTGCAAG AGATCCAAGC CTTGCGACGT
AACATCGTGC AACGTGAAAC TGAGCGCGCG CAACGCGCCG ATTTGGTTCG CCAAGAGCGT
CTCGTTCTCT CCTCTGGCCG CGTGCATCGC TTGACGGGTT TGTGGATGCT CCCGACGTTC
GGCGGTCGCG GCGGTCGCAA GGCGGGCACG TTGGAGGCGC ACACGAATGG TATGCGATAT
CTCGGCGCCA AAATGGACGA GCAGGTGGAC ATTATGTACG ATAACATCCG ATTCGCGTTC
TTCCAACCGG CCAAGCAGGA GATTAAGACT TTGATTCATT TCCACTTGAA GAATCCAATC
ATGATCGGCA AAAAGAAGAC GCAAGACGTG CAATTCTACC AAGAAGTCAT GGAGGCTGTG
CAAAACTTAG ACGGCGGGCG TCGTAACATG TACGACCCGG ATGAAATCGA AGACGAACAA
CGCGAGCGCG AGCGTCAAAA GAAAATCCAA AAGGAGTTTA GCCACTTTGC CAAGCGCGTG
CAAGAAATTT GGGAAAAGGA TTTCCCGCAG TTGAATTTGG AGTTTGACTC GCCGTATCAC
GAGCTCGCAT TCCAAGGGGT GGCGTACAAG TCCACGGTGC GCATTCTGCC CACGACGTCG
TGCTTGGTCG AACTCACGGA GTTCCCGCCG CTCGTGCTCG CTTCTAGCGA TATCGAAGTC
GTCAACTTGG AGCGCGTCGG TTTCCATTTG AAGAACTTTG ACATGGCGAT CATCTTCCGC
GATTTCAACC GCGAAGTCCA TCGCATCGAT CAAATCCCGA GCCAATACTT GGAGAACATC
AAGCAGTGGT TGACGACGCT CGATATCAAG TACTACGAAG GTAAAGCCAA CTTGAACTGG
AAGCCGTTAC TTCGACAAAT CAAAGAAGAC CCCGACGGCT GGCTTGAAGC CGGCGGTTGG
GAATTCTTAA ACAACGAAGC CTCCGACGGC GAAGACGAAG AAGACGAGGA AATGAGCGAG
TTCGAACCGA GCGAAGACGA AGACGAAGAC GAGTCCGAAG AAGAGTCCGA ATCCGAAAGC
GTGTACGATT CCGAGGAAGA CGACGAAGAG GAAGAATTGG ACGAGGACGA CGAGGAAGGT
TTGTCTTGGG ACGAGCTCGA GGAAAAGGCC GCGAAAGAGG ATGCCGACGC CAGCGATTCC
GACGAACGGC CTCGAAAGAA GAAGCGATAG
|
|---|
| Protein sequence | MRCLYETWRA ERDGAFGGAS ALVVGTGANK EDDLRYLKAV ALEVWLFSYE LPDTLLMFTE
RGMHVVAGGK KAALMENARE VLKEECGLDL AVHVKPKGED GAAQAAAVVE AIKSENLVVG
MVMKEKNEGA MMQYVTKALG EAGMEIKDVT SGVSLAMAAK DEKELGFVNK AVTLTSKALG
FAVKEMEATI EDEKKLTHAK LSEMTEDAII DPSRLGLKFP PEDVDICYPP IFQSGGEYDL
KYSAESANTK LHYASPPAVV HMSVGARYTQ YCANVGRTYM VDPTPAQEAT YAAILAAQEA
GIAALVDDAT CASVYEAVKS SLTSAEGVDG ATLASKLNKN VGTAMGLEFR DMTFVLNGKC
ETKIKAGMLF NLAVGVQGLK EPSAKEGSKN ETYAVMIADS VLVGAAGETP SVLTTNPKGV
KEISYIMNDD DDDDDDEEAE VQIKQGGVIM DAKTRAEQSG PSSAEDRERR QRALADKKNA
ETYKRLTQAG EEEIQNATMG SSAEFVAYKS MREVPTPKNK ELVLAVDQER ETVLVPIYGQ
LVPFHVMSVK SASVSQDAGA AFIRINFQHP TGSGAVAVQK YAAAARFPNS IFLKEVSFRS
TDARHANHVV QEIQALRRNI VQRETERAQR ADLVRQERLV LSSGRVHRLT GLWMLPTFGG
RGGRKAGTLE AHTNGMRYLG AKMDEQVDIM YDNIRFAFFQ PAKQEIKTLI HFHLKNPIMI
GKKKTQDVQF YQEVMEAVQN LDGGRRNMYD PDEIEDEQRE RERQKKIQKE FSHFAKRVQE
IWEKDFPQLN LEFDSPYHEL AFQGVAYKST VRILPTTSCL VELTEFPPLV LASSDIEVVN
LERVGFHLKN FDMAIIFRDF NREVHRIDQI PSQYLENIKQ WLTTLDIKYY EGKANLNWKP
LLRQIKEDPD GWLEAGGWEF LNNEASDGED EEDEEMSEFE PSEDEDEDES EEESESESVY
DSEEDDEEEE LDEDDEEGLS WDELEEKAAK EDADASDSDE RPRKKKR
|
|---|
| |