| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | OSTLU_40897 |
|---|
| Symbol | SPD2 |
|---|
| ID | 5002250 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ostreococcus lucimarinus CCE9901 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009360 |
|---|
| Strand | - |
|---|
| Start bp | 89654 |
|---|
| End bp | 90777 |
|---|
| Gene Length | 1124 bp |
|---|
| Protein Length | 328 aa |
|---|
| Translation table | |
|---|
| GC content | 61% |
|---|
| IMG OID | 640417671 |
|---|
| Product | Spermidine synthase |
|---|
| Protein accession | XP_001418368 |
|---|
| Protein GI | 145347839 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0421] Spermidine synthase |
|---|
| TIGRFAM ID | [TIGR00417] spermidine synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.862336 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGGACG CCGAGCCGAG CGCGTACGGC GCCGAGACGT TCGCCGAGGG GCACTGGTAC
CACGAACTCC TCGAGGATGG GCTCGCGCTG AGCTATCGGG TGCGCGAAGA CGCGACGCGA
CGCGACGCGA GGGGGCGGGA CGATGGGACG ATGGGACGCG AGCGGCGACG CGACGACGCG
GGACGCGCGC GAGGGAGGAC TGACGACGAC GACGACGACG ACGGCGCGCG CGATAGGTCG
AGGAGGTGCT GTATCAGGGG ACGTCGAAGT TTCAAGAGGT CGAGGTCGTG CGGACGGTGC
CGTTCGGGTC GCTTCTCATC ACGGATGGGT TGATGCAGTC GAGCGAGCAC GACGAGTACG
TGTATCACGA GTCGCTGGCG CATCCGGCGC TGGTGGCGCA CGCGAACCCG AAGCGGGTGT
TCATCGGTGG CGGTGGCGAG GGAGCGACGC TGCGCGAGGT GTTGAGGCAC GAGAGCGTGG
AGGAGTGCGT GATGGTGGAC ATCGACGGCG ACGTGGTGAA CATGTGCCGA GAGCACACGC
CGTTTTACAG CGCGGGGGCG TACGGGGATA AACGAACGCG TTTGATCATC GGCGACGCGA
AGGAAGGATT GGCGAACGAG CCCGATGGGA GCTTTGACGT GATCATCATG GATTTGAGCG
ACCCGCTCGA TGGGGGGCCG TGCTATCAAC TGTACACGAC GGATTTCTAT CGATTGCTGA
GCAAGAAGCT CGCGCCGGGA GGAATCTTCG TCACGCAGAG CGGATGCGCG TCCGTGCGCG
ATGCGCATCA CGTCTTCTCA CCGATTCATC ACACTCTGAC GCAAGTGTTC CCGAAAGTTT
ACGGTTACAC CATGTGCGTG CCGTCGTTCA CGTCAGAGTG GGGTTTCAAT CTCGCCGTAA
ACGACACGAG CATCGACTTG AGCGGCGTCG ACGCGGACGA GACTTTGAAA AAGCGTGGAT
TAGAGATGAA GTTTTACGAC ACCGTGTCGC ACAGGCGCAT GTTTGCGCTG CCCAAGCCGC
TGCGCACGCT CATCGATAAC GAAAAGCGCG TGATGACGGT GGAAAATCCG CTCTTCATGT
GCTCGACGGA TACTCACGCT GGTATTTTTG ACCAAGAGAG CTAA
|
|---|
| Protein sequence | MADAEPSAYG AETFAEGHWY HELLEDGLAL SYRVEEVLYQ GTSKFQEVEV VRTVPFGSLL
ITDGLMQSSE HDEYVYHESL AHPALVAHAN PKRVFIGGGG EGATLREVLR HESVEECVMV
DIDGDVVNMC REHTPFYSAG AYGDKRTRLI IGDAKEGLAN EPDGSFDVII MDLSDPLDGG
PCYQLYTTDF YRLLSKKLAP GGIFVTQSGC ASVRDAHHVF SPIHHTLTQV FPKVYGYTMC
VPSFTSEWGF NLAVNDTSID LSGVDADETL KKRGLEMKFY DTVSHRRMFA LPKPLRTLID
NEKRVMTVEN PLFMCSTDTH AGIFDQES
|
|---|
| |