| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | OSTLU_31322 |
|---|
| Symbol | ODC1 |
|---|
| ID | 5001238 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ostreococcus lucimarinus CCE9901 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009358 |
|---|
| Strand | + |
|---|
| Start bp | 690774 |
|---|
| End bp | 692707 |
|---|
| Gene Length | 1934 bp |
|---|
| Protein Length | 547 aa |
|---|
| Translation table | |
|---|
| GC content | 56% |
|---|
| IMG OID | 640416659 |
|---|
| Product | Ornithine decarboxylase |
|---|
| Protein accession | XP_001417323 |
|---|
| Protein GI | 145345663 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0019] Diaminopimelate decarboxylase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.0025491 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCGATGC CGAAGAGACG GATTCAAGCG CGCTACCGAC GATCTGGCGC GTCTTTTTCG
GTGCAAGATC GTGATTTAGT CGCGGCGCTG GAGAATATTA AGAATACGCG CGCGACCGCG
TCGTACGGGA ACGCGAACGC GTACTCGAGC GCGACGGCGA GCGGCGTGCA CGCGGACGTG
CCGACGGCGC TCGGGGTGTA CGTCAAGGGC TTGGCGCATA CCGTCGGGTT TAAGGATTCG
CTGCAGAATG AACCGGATGC TGAAGAAGTG CCGGTGCCGG AGCAGCCGAA GACGCTGACG
CTCGAGCACG TGTACGACGC GTTCACGGTG GAGACCATCC CGTCGCGAAG GCTGGTCGAC
GTGCACGCGC GCGCCGCGGA GCTCGTCGAA AAGCATTCTC TCGAGGAAAA CTTTTGCATC
GTCGACTTGG CCACGGTGAA GGCGCTTTAC GATTACCACA AAGCGAAGCT TCCGCGTGTG
CGGCCGCATT TCGCCGTCAA GTGCTTGCCC GACCGCGGCA TCATCTCCAC CCTCGCCGCG
TTGGGCGCCG GTTTCGACTG CGCGTCTCAA GGCGAAGTTG AGTTGGTTAC TGGTCTCGGT
GTGCCTTCTG AACGCATTAT CCTCGCACAC CCCGTGAAGC GGCCGTGCGA TTTGCGCTGC
ATCGCCGAGT ACGAGGTGCC GTACACCACC TTTGACTCTG TGTCCGAGTT GCACAAGATT
CTCGCGTCCA AGGTCAAGGT GAAGCTCATC TTGCGAATTC GCGCTGATGA TCCCATGGCG
CGTCTTCCGC TCGGAGCCAA GTACGGCGCG CCACTTGACA AGGTCTCAGA GCTTCTTTCT
GTCGCCGCGT TGCTCAACTT GGACGTCGCC GGCGTTTCGT TTCACGTCGG TTCTTCCTCG
CGCAATCCGG ACGCCTACCG CAACGCCATT CAGTTTGCGA GGAAAATCTT CGACGAAGCG
AAAGAGATAG GTTTCAACAT GCACCTCTTG GATATCGGCG GTGGTTTCAC CGGTTCGTTC
GACGCCAACG GCAACGTCAC CGAAGCGCCA TCCAACTTTG ATCGCGTTCG AGACGCTCTC
GATGAAATTT TTCCCGACGA CGGAACGTTT GAAGGTTTGC AAATCATCGA CGAGCCCGGT
CGCTACTTCG CGCAAGCTCC GGTCACGATG GCGTGCCTCG TATACGGTAC GCGCGAAGGG
ACGAACGATG CAGGTGAGCG TCACATGGAT TACTACATCA CCGACGGCTT GTACGGCTCG
TTCAACGGCA TCATCTATGA CGGTCTCGAC TTGCCGACGT ACTTCTTGCA ACCGAACAAG
GTTGCCCCGC TCGCTGGAAT CGATAACGAT TTCGACAAGA TTAAGATTTC GTCCACCGTG
TACGGGCCGA CCTGCGATTC GCTCGATTGC GTCATGCGAA ACATTCCTCT GCCGGAGCTG
TCCAACGGTG ACTGGCTCAT GTTCCCAGAT GCCGGAGCTT ACACCATGGC TGGTGCGTGC
GATTTCAACG GTATCCTGTG CTCGAAATAT CTTTGCTTCT ACGTGAGTAG CGAAAAGATG
ACGAGCACGG CGACGGAGAA AGAGCTCTCA GATTTGGTTT ACGCAAACGA TCGACCGGCG
TGCACGCTCG TTCAAAACCG CTGAGCGCGG GGACTGAGCC GACCATTCAA TTTCCTATGT
CCAAACGACA AATTCAACAC AATCAATTTT GTTCGAACAA ACATAATCCA ACCTTTGCTT
CTTCAGAAGC GAGTCGAGAA TGACCGTGGT AGCAGTTCGT CAAGAAGACG AATGCGGACG
ACATCGATTC CAAGTCGAGC TTCATGGTCG AGACACATTG TCTCGGGATG CGTCCTGTAC
AATATTAACA ACATGCGATA GATCACACAC ATAGATGGTG CCACACTGTA AGCTGATCCT
CAATATATCA TCAA
|
|---|
| Protein sequence | MPMPKRRIQA RYRRSGASFS VQDRDLVAAL ENIKNTRATA SYGNANAYSS ATASGVHADV
PTALGVYVKG LAHTVGFKDS LQNEPDAEEV PVPEQPKTLT LEHVYDAFTV ETIPSRRLVD
VHARAAELVE KHSLEENFCI VDLATVKALY DYHKAKLPRV RPHFAVKCLP DRGIISTLAA
LGAGFDCASQ GEVELVTGLG VPSERIILAH PVKRPCDLRC IAEYEVPYTT FDSVSELHKI
LASKVKVKLI LRIRADDPMA RLPLGAKYGA PLDKVSELLS VAALLNLDVA GVSFHVGSSS
RNPDAYRNAI QFARKIFDEA KEIGFNMHLL DIGGGFTGSF DANGNVTEAP SNFDRVRDAL
DEIFPDDGTF EGLQIIDEPG RYFAQAPVTM ACLVYGTREG TNDAGERHMD YYITDGLYGS
FNGIIYDGLD LPTYFLQPNK VAPLAGIDND FDKIKISSTV YGPTCDSLDC VMRNIPLPEL
SNGDWLMFPD AGAYTMAGAC DFNGILCSKY LCFYVSSEKM TSTATEKELS DLVYANDRPA
CTLVQNR
|
|---|
| |