Gene Nwi_2213 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNwi_2213 
Symbol 
ID3676881 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNitrobacter winogradskyi Nb-255 
KingdomBacteria 
Replicon accessionNC_007406 
Strand
Start bp2405842 
End bp2406957 
Gene Length1116 bp 
Protein Length371 aa 
Translation table11 
GC content59% 
IMG OID637713776 
Productextracellular ligand-binding receptor 
Protein accessionYP_318819 
Protein GI75676398 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.650544 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAATCAT TGAAGCTGAT CTGCCTGGCC CTTTGCGCCT CCCTGGCGCT GTCGGCCACG 
GCGTTCGCCC AGGACATCAC CGTCGCGGTG GCCGGCCCGA TGACGGGCAG CGAATCCGCT
TTCGGCCGCC AGTTGCATAA CGGCGCCGAG CAGTTCGTCG CCGATGCCAA CGATATGGGC
GGCGTGCTCA ACAAGAAACT CAAGCTGTTC GTCGGCGATG ACGCCTGCGA CCCGAAGCAA
GCGCGCTCCA TCGCTGAACG AATCGCAAGC CGGGGCATTC CGCTCGTCGC CGGACACTTC
TGCTCGTCGT CGTCCATTCC GGCTTCAGAA GCCTACGCCG ACGGAAATAC ACTACAGATC
ACACCGGCCA CCACCAACCC GCTGTTCACG GAACGCAAGC TGTGGAACGT GCTGCGCGTC
TGCGGCCGCG ACGACCAGCA AGGCATCGTC GCCGCCGAAT ACATCGTCAA AAATTTCAAA
GACAAGAACA TCGCCATCCT CAACGACAAG ACCACCTACG GCAAGGGACT CGCCGACGAA
ACCAAGAAGG CGCTGAACAA GGCCGGCTTT CAGGAGAAAA TGTTCGAGTC CTACAACAAG
GGCGACAAGG ACTTTAACTC CATCGTCTCC CGCCTGAAGC GCGACAACAT CGATCTGGTG
TTCATCGGAG GCTATTATCA GGAAGCCGGA CTGATCCTGC GGCAGATGCG TGATCAGGGA
CTCAAGACCA TCATGATGGC GGGCGATGCG CTGAACGACA AGAAGTTTGC CTCCATCACC
GGCCCGCTTG CCGAAGGAAC GCTGTTCACC TTCGGTCCCG ACCCGCGCAA CAAGCCGACC
GCCAAGGCAG TCGTCGAGAA ATTCAAGGCC AGGGGCATCG ATCCGGAAGG CTACACACTC
TACACCTATG CGGCGATGCA GGTGTGGGCG CAGGGCGCAG CGAAAGCGGG CACCACGGAC
CCGATGAAGG TGATGAAAGC CATCAAGGCA GGCGCGTGGG ATACCGTCCT CGGCAAGCTG
GAATTCGATG CGAAGGGTGA CATCAGGCAA ATCGACTATG TCATTTACAA GTGGGACGAC
AAGGGCAACT ACGCTGAAAT CGACCCTGCT TTGTGA
 
Protein sequence
MKSLKLICLA LCASLALSAT AFAQDITVAV AGPMTGSESA FGRQLHNGAE QFVADANDMG 
GVLNKKLKLF VGDDACDPKQ ARSIAERIAS RGIPLVAGHF CSSSSIPASE AYADGNTLQI
TPATTNPLFT ERKLWNVLRV CGRDDQQGIV AAEYIVKNFK DKNIAILNDK TTYGKGLADE
TKKALNKAGF QEKMFESYNK GDKDFNSIVS RLKRDNIDLV FIGGYYQEAG LILRQMRDQG
LKTIMMAGDA LNDKKFASIT GPLAEGTLFT FGPDPRNKPT AKAVVEKFKA RGIDPEGYTL
YTYAAMQVWA QGAAKAGTTD PMKVMKAIKA GAWDTVLGKL EFDAKGDIRQ IDYVIYKWDD
KGNYAEIDPA L