| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nwi_1443 |
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| Symbol | |
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| ID | 3677185 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nitrobacter winogradskyi Nb-255 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007406 |
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| Strand | + |
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| Start bp | 1571189 |
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| End bp | 1572238 |
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| Gene Length | 1050 bp |
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| Protein Length | 349 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637712995 |
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| Product | dihydrouridine synthase TIM-barrel protein nifR3 |
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| Protein accession | YP_318056 |
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| Protein GI | 75675635 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0042] tRNA-dihydrouridine synthase |
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| TIGRFAM ID | [TIGR00737] putative TIM-barrel protein, nifR3 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.915684 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCAAGA GCCTGACAGG TCCTCCTCCG TCATCAAGTC TCGGACCGTT CGCGGTCGGA
GATATTTCGA TCCGCAACCG CGTTCTTCTT GCGCCGATGT CGGGGATCAC GGACAGGCCG
TTTCGACGTC TTACGGAGTC GCTGGGGGCG GCGCTCGTTG TTTCGGAAAT GACCGCGAGC
GACGATCTCG TCCGCGGGCG TCCAATGTCC GTCCTTCGCT GTGAAGCCAC CGGTCATGGG
CCGCACGTCG TTCAGCTTGC CGGCTGCGAG ACGCGCTGGA TGGCGGAAGC CGCGCGGATC
GCCGAGGCGG CCGGCGCCGA CATCATCGAT ATCAACATGG GTTGTCCCGC CCGGCACGTG
ACAGGCGGCC AGTCGGGTTC GGCGCTGATG CGCGATCCCG ACCATGCCCT CGACCTGATC
GAGGCGACGG TCGGCGCGGT GAACGTGCCG GTCACACTCA AAATGCGCCT CGGATGGGAC
GGCCACTCGT TCAATGCGCC TTCGCTGGCG CGGCGCGCCG AATCCGCCGG CGTGCGGATG
ATCACGGTTC ATGGCCGGAC GCGCTGCCAG TTCTACAAAG GCCGCGCCGA TTGGCGGGCC
GTGCGGGCCG TGAAGGAAGC GGTGCGCGTT CCCGTCGTCG TCAACGGCGA CATCACATCG
TTCGACGCAG CCGTTGCTGC GCTGGAGGCG TCGGGGGCCG ATGCGGTCAT GGTGGGCCGC
GGCGCGCAGG GCCGCCCCTG GCTGCCGGGT CAGATCGGGC GGCGGCTCGA AACCGGCATC
GAAGAATCCC ATCCTTCGCT CACGGATCAG TTGGCTTACA TCCGCGCGCT TTATGACGAC
CTGCTTCTGC ATTACGGCCT GCGCATCGGG CTTCGTCATG CGCGAAAGCA TCTTGGCTGG
GCGCTGGATA CGGCGGCAGC GCTTCGTGCC GTGCCGACAC CGGTCCAGAA ATCGTGGCGG
ACGAAAATTC TGACGGCCGA TGATCCCTCC GGCGTACAGC GGTTACTGGT GGACGCGTTC
GACGATTTCG CGTGGAGGGC CGTGGCATGA
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| Protein sequence | MSKSLTGPPP SSSLGPFAVG DISIRNRVLL APMSGITDRP FRRLTESLGA ALVVSEMTAS
DDLVRGRPMS VLRCEATGHG PHVVQLAGCE TRWMAEAARI AEAAGADIID INMGCPARHV
TGGQSGSALM RDPDHALDLI EATVGAVNVP VTLKMRLGWD GHSFNAPSLA RRAESAGVRM
ITVHGRTRCQ FYKGRADWRA VRAVKEAVRV PVVVNGDITS FDAAVAALEA SGADAVMVGR
GAQGRPWLPG QIGRRLETGI EESHPSLTDQ LAYIRALYDD LLLHYGLRIG LRHARKHLGW
ALDTAAALRA VPTPVQKSWR TKILTADDPS GVQRLLVDAF DDFAWRAVA
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