| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nwi_1208 |
|---|
| Symbol | |
|---|
| ID | 3675667 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrobacter winogradskyi Nb-255 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007406 |
|---|
| Strand | - |
|---|
| Start bp | 1323506 |
|---|
| End bp | 1326790 |
|---|
| Gene Length | 3285 bp |
|---|
| Protein Length | 1094 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 637712758 |
|---|
| Product | alpha amylase |
|---|
| Protein accession | YP_317822 |
|---|
| Protein GI | 75675401 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0366] Glycosidases
[COG3281] Uncharacterized protein, probably involved in trehalose biosynthesis |
|---|
| TIGRFAM ID | [TIGR02456] trehalose synthase
[TIGR02457] trehalose synthase-fused probable maltokinase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATGAAA TGTCGCATAT CGATGCTGAT AGATACGTCC AGACCGACGA TCTCTGGTAC
AAGGACGCTA TTATCTATCA GCTTCACGTC AAGGCATTCG CCGACAGCAA CAACGACGGA
ATCGGTGACT TCGTCGGTCT CACCAACAAG CTCGACTACC TTCAGGAACT CGGCGTCACC
GCGCTGTGGC TGTTGCCGTT CTATCCATCG CCGGGGCGCG ACGACGGATA CGACATTGCG
GATTACGGCT CTGTCAATCC CGATTTCGGC ACCATGAAGG ACTTTCGCCG ATTCATCTCG
GAAGCAAAAC GACGCGGCCT GCGCGTGATT ACCGAGCTCG TGATCAATCA TACGTCCGAT
CAGCACAGAT GGTTCAAACG TGCCCAGCGA AGTCCTGCCG GATCAAGCGC GCGCAACTGG
TATGTCTGGA GCAACACAGA CAAGAAGTAT CAGGGAACCC GGATCATCTT CACCGACACC
GAGAAATCAA ACTGGGCCTG GGATTCCGAA GCCAACGCCT ACTATTGGCA TCGCTTCTTC
AGTCATCAAC CAGACCTGAA CTTCGACAAC CCTCGCGTCG TCAGAGCTGT CATTCAGGTG
ATGAAAAGAT GGCTCGACAC TGGCGTCGAC GGGTTTCGAC TGGATGCAAT TCCGTATCTT
TGCGAGCGCG AGGGAACCAA CAACGAGAAT CTTCCCGAAA CCCATGCGGT GATCAAACAT
ATCCGAGCAG CGCTTGATTC TTACGCCAAG GGAAAGGTTC TTCTCGCCGA GGCCAACCAA
TGGCCGGAGG ATGTTCAGTT CTATTTCGGG GACGGCGATG AGTGCCACAT GGCCTATCAC
TTCCCCTTGA TGCCGCGCAT CTACATGGCG ATCGCCCAGG AAGACCGCTT TCCGATCACA
GACATTCTGA GGCAGACGCC CGACATTCCC GACAACTGTC AATGGGCGAT GTTTCTACGA
AACCATGACG AGCTGACGCT CGAAATGGTG ACCGATATCG AGCGCGACTA TCTATGGTCG
ACCTATGCAG CGGATCCTCG TGCGCGCATC AACCTCGGCA TTCGGCGCCG CCTCGCTCCG
TTGATGGATA ACGACCGCCG CAAGATCGAG CTGATGAACT CATTGTTGAT GTCGCTTCCG
GGAACGCCGA TCATCTACTA CGGCGACGAG ATCGGAATGG GTGACAACAT CTACCTGGGC
GACCGCAACG GCGTACGCAC TCCGATGCAA TGGACTTCGG ATCGCAACGG TGGATTTTCT
CGATGCGATC CCGCGCGGCT TTATGCGCCT CCCGTCATGG ACGCCGTCTA CGGCTATGAG
TCCGTGAATG TCGAATCGCA ATCGCGAAGT CTGTCCTCAT TACTGAGCTG GATGAAGAAG
CTGATTTCGG TGCGAAAATC CAGTCACGTT TTCGGCCGGG GAACGATGGC CTTCGTTCGT
TCGTCGAATC GCAGCGTTCT CGCTTATCTG AGGCAGCATG GCGACGAGGC CGTACTCTGC
GTCGCCAATC TGTCGCGATC CGCGCAGGCT TCCGAACTCG ATCTATCGCA TTGGAAAGGC
CGCTCGCCTC TTGAAATGCT GGGACGGACG ACCTTTCCCG ATATTGGCGA ACTTCCGTAC
CTGATCACGC TCGCACCCTA TGGATTCTAC TGGTTCCGCC TGAATGAAAA GCCACCGTCT
CCGAACGTCG CTGCCGTGAT CGTGCCGGAC TATGAGACGC TCGTCGTGCC CCAGGGTGCG
ACCTGGATGT CGCTGGCGCG GACACGCTCG ATCTTCGAGC GTGATGTTCT GCCATCTCAT
CTCGCCCGCT CGCGCTGGTT CCCCGAGCGA TCCGCCGGCG CAATCACCGC GCGCGTGCCG
GCGGCGATAC CGCTCACGAA AGACCAGGTT TCAAGGCCAT GGCTGTCGAT CTTCGACGTC
ACCCATCGCG GACAGACAGG GCGATATGCG ATGCCGATCC AAATCAGGTG GGATCGGCTC
GATCGCAAGA ACTATGACGC TAGAAACGTT GCCGCTGTGC GGCAAGGCTC GCGGGAGGGA
ACGCTGATCG ACGCCGCCTA TGAGAGCGGC CTGATCACGG GCATCATCGA AGGTCTGCGT
CAACGTGCGA CCTTCGAGGG AGGTAACTTA CAGATCTCTT ACATTCCCAC GGAGCGGCTG
GCCTCGATCA CGGAGGAACC GATCGAGAAC GTGAGACCGG TTCAAACCGA ACAGTCGAAC
AGCACGGCGC TGGTGGATCA GAAGTTTGTG GTCAAGCTTT ACCGAAAGCT TGAGAATGGC
ATCAATCCTG AAGTGGAGGT GGGACGTTTT CTGACTGATG TGGCCGGATA TGCCAATACG
CCCGCCTTGC TCGGCAGCGT CGAACTGACG GGACCTGATG TCCATGCCGC CGTCGCTATT
GTCCATGCTT TCGTCGGCAA CCAGGGGGAC GCATGGACCA TCAGCAGCGC CGCGCTGGAC
CGTTTCATCG ACGAGCAACG GCTTGTCGGC GCGATCGATA CCGCTCCGGC GCTTGAGGAG
AAAGCAGCCT ATCAGCGCTA CATGATGCAG CTCGGCAAGC GTGTCGCGGA GATGCATGTG
GCGCTGGCCA GCCGTGGTGA TATCGAGGAT TTTCGTCCCG AGCCAGTAAA CGCGTCGGAT
GTCGCGCATT TTATCGATCG CCTTACGGCA CGCGCGGAGA AGACGTTTGA CCGCCTGGCT
CAAGCCAGGC TTTCGGAATC GGATCGGATT CTCGTCGAAG AGATCCAGAG TCTCCGTCCA
GCCCTGCATG GTTTACTCGC CGGGCTGCTG CCGTCATCGA TTCAGATGTA CAGTATTCGG
CATCACGGTG ACTTTCATCT CGGACAGGTT CTCGTCGTTC GCGACGACGT CTTTATTATC
GACTTCGAAG GCGAACCGCG GCGAAGTCTT TCTGAGCGGC GCATGAAGGC GCCGGCGGCT
CGTGACGTCG CAGGGCTGAT CAGATCCATC GATTATTCCG TGACCTCGGC GCAACAACGC
GTTCTGAAAA CCGAGGTGGA CGACGATGGA CGACTGGCAG AGGCCTTATC AGCATGGCGC
GACGAGGCGA CGCAGACTTT TCTGATCGCC TATCGTGAAG CAATGTCCGA TTCTCGACTA
TGGCCGCAGG ATAACGACGA GAGCGAAGGG ATGCTGCGAT TTTTCCTGCT CGAGAAGGCC
CTTTATGAGA TCGACTACGA GTTGGCGCAT CGGCCGGATT GGCTACGTGT CGCGCTGGAT
GGCGCATTAC GGGTACTGCG CAACGATAAA CGAGATCGTG CATGA
|
|---|
| Protein sequence | MNEMSHIDAD RYVQTDDLWY KDAIIYQLHV KAFADSNNDG IGDFVGLTNK LDYLQELGVT
ALWLLPFYPS PGRDDGYDIA DYGSVNPDFG TMKDFRRFIS EAKRRGLRVI TELVINHTSD
QHRWFKRAQR SPAGSSARNW YVWSNTDKKY QGTRIIFTDT EKSNWAWDSE ANAYYWHRFF
SHQPDLNFDN PRVVRAVIQV MKRWLDTGVD GFRLDAIPYL CEREGTNNEN LPETHAVIKH
IRAALDSYAK GKVLLAEANQ WPEDVQFYFG DGDECHMAYH FPLMPRIYMA IAQEDRFPIT
DILRQTPDIP DNCQWAMFLR NHDELTLEMV TDIERDYLWS TYAADPRARI NLGIRRRLAP
LMDNDRRKIE LMNSLLMSLP GTPIIYYGDE IGMGDNIYLG DRNGVRTPMQ WTSDRNGGFS
RCDPARLYAP PVMDAVYGYE SVNVESQSRS LSSLLSWMKK LISVRKSSHV FGRGTMAFVR
SSNRSVLAYL RQHGDEAVLC VANLSRSAQA SELDLSHWKG RSPLEMLGRT TFPDIGELPY
LITLAPYGFY WFRLNEKPPS PNVAAVIVPD YETLVVPQGA TWMSLARTRS IFERDVLPSH
LARSRWFPER SAGAITARVP AAIPLTKDQV SRPWLSIFDV THRGQTGRYA MPIQIRWDRL
DRKNYDARNV AAVRQGSREG TLIDAAYESG LITGIIEGLR QRATFEGGNL QISYIPTERL
ASITEEPIEN VRPVQTEQSN STALVDQKFV VKLYRKLENG INPEVEVGRF LTDVAGYANT
PALLGSVELT GPDVHAAVAI VHAFVGNQGD AWTISSAALD RFIDEQRLVG AIDTAPALEE
KAAYQRYMMQ LGKRVAEMHV ALASRGDIED FRPEPVNASD VAHFIDRLTA RAEKTFDRLA
QARLSESDRI LVEEIQSLRP ALHGLLAGLL PSSIQMYSIR HHGDFHLGQV LVVRDDVFII
DFEGEPRRSL SERRMKAPAA RDVAGLIRSI DYSVTSAQQR VLKTEVDDDG RLAEALSAWR
DEATQTFLIA YREAMSDSRL WPQDNDESEG MLRFFLLEKA LYEIDYELAH RPDWLRVALD
GALRVLRNDK RDRA
|
|---|
| |