Gene Nwi_0072 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNwi_0072 
Symbol 
ID3675630 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNitrobacter winogradskyi Nb-255 
KingdomBacteria 
Replicon accessionNC_007406 
Strand
Start bp85217 
End bp86920 
Gene Length1704 bp 
Protein Length567 aa 
Translation table11 
GC content60% 
IMG OID637711607 
ProductPAS sensor protein 
Protein accessionYP_316692 
Protein GI75674271 
COG category[T] Signal transduction mechanisms 
COG ID[COG2202] FOG: PAS/PAC domain 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.587955 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.109403 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTTTTCT TCAAAAAGTG GTCGATCGCA AAAGAAGATG CTGCGAAAAC CGCAGCAATC 
AGAAAATCGC AGGCCGTCAT CGAGCTCGGT CTTGATGGAA CGGTCGTCAC GGCTAACGAG
AACTACCTCA GCATATTCGG CTACACGCTG GCGGATGTTC GCGGCCAGCA CCATAGCATG
TTTGTGGAGG CGGACGAGCG GTCCGGCGCC GCATATCGCG ACTTCTGGGC CAGGCTGAAC
AAGGGTGAGA CCCAATCGGC CGAATTCAAA CGTATCGACA GGCACGGCGA CGAGGTCTGG
GTTCAGGCTT CCTACATTCC GGTGCTGGAT TCGAGAGGGA ATCCGAAAAA AATCATCGCG
CTGGCGGCTG ACATCACCGC CAAGAAGATC AAGGAGCTGG AGAACGCGGG TCAGGTCTCC
GCCATCGAGC GCGCGCAGGC CGTGGTCGAA TTCAACCTCG ACGGCACGAT CATTACCGCG
AACAAGAACT TCCTCAATGT GATGGGCTAC ACCCTCGGTG AAATGCAGGG GAAGCATGAC
CGGGTATTCG TGGAGTCATC GGAGCGGGCT GGCGACGCCT ATCGCGACTT CTGGGCCAGG
CTCAATCTCG GTGAGCCTCA ATCCGCTGAA TACAAGCGGA TTAATAAGGC CGGGAACGAA
GTGTGGCTGC TGGCGACCTT CAACCCGATC GTGGACGAGA GCGGCAAGCC CTTCAAGGTT
GTTGCGTTCG CGACCGACGT CACCAAGCAG AAGGTGAAGT CGGCTGATCT CGAAGGCCAG
ATCACGGCCA TCGGAAAGTC GCAGGCGGTC GTCGAACTCG GCATGGATGG AAAGATCCTG
ACCGCGAACG ACAACTTCCT GAAAACGTTC GGTTACGCGC TCCTCAAGGA CATCCAGGGC
AAGCACCACA ACATGTTTGT GGAGGCTGCC GAGCGGACCA GCACCGCCTA TCGCGACTTC
TGGGCCAGGC TCGCTCGCGG CGAGGCTCAG TCGGCCGAGT ACAAGCGTAT CGGCAAGGAC
GGCAAGACCG TCTGGCTGCA GGCTTCCTAC AATCCGGTTC TGGATTCGAG GGGCAAGCCT
GTAAAGGTGG TTGAGATCGC GACCGACATC ACGGCCAGGA AGCTCAAGGC CCTGGAGAAC
GAGGGTCAGC TCGCCGCTAT CGAACGCGCC CAGGCGATCG CTTCGTTCAG GCCGGACGGC
ACCATTATCG CCGCCAACGA CAAGTACCTG AAGGCGATGG GTTACACCCT CGGCGAGGTT
AGCGGCAAGC ATGACGGAAT GTTCGTCGAG TCTTCGGAGC GTTCCGGTTC TGCCTATCGC
GAGTTCTGGG GCAAGCTCAA TCGCGGCGAG GCTCAGTCGG CCGAGTTCAA GCGCGTCGCC
AAGGACGGCA GCGAGGTTCG GATCCGGGCT TCGTACATCC CGGTCCTCGA CGCCCAGGGC
AAGACGACCA AGGTTGTCCA GTACGCCATG GTGATCGAAT CGGCAGCCGC CGCCAGCGAA
GAAATGAGTG CTCCCATCCA GGAAGCACCC GTGTCGATGG CCAAGCAGGC CGACGAGCAG
AGCTTGAGCA TGAGCCGGCT GGAAAGCCGT CGCAAGAGCG TCAACGCTGG TCCGTCGCCC
CTCGCTCAGT TCCTGACGAA CCTTCGTGAG GGATTCAGCT CCGCGGTGGC GTCCTCGACG
AGAGCTGTCG CCAACTTCTT GTGA
 
Protein sequence
MFFFKKWSIA KEDAAKTAAI RKSQAVIELG LDGTVVTANE NYLSIFGYTL ADVRGQHHSM 
FVEADERSGA AYRDFWARLN KGETQSAEFK RIDRHGDEVW VQASYIPVLD SRGNPKKIIA
LAADITAKKI KELENAGQVS AIERAQAVVE FNLDGTIITA NKNFLNVMGY TLGEMQGKHD
RVFVESSERA GDAYRDFWAR LNLGEPQSAE YKRINKAGNE VWLLATFNPI VDESGKPFKV
VAFATDVTKQ KVKSADLEGQ ITAIGKSQAV VELGMDGKIL TANDNFLKTF GYALLKDIQG
KHHNMFVEAA ERTSTAYRDF WARLARGEAQ SAEYKRIGKD GKTVWLQASY NPVLDSRGKP
VKVVEIATDI TARKLKALEN EGQLAAIERA QAIASFRPDG TIIAANDKYL KAMGYTLGEV
SGKHDGMFVE SSERSGSAYR EFWGKLNRGE AQSAEFKRVA KDGSEVRIRA SYIPVLDAQG
KTTKVVQYAM VIESAAAASE EMSAPIQEAP VSMAKQADEQ SLSMSRLESR RKSVNAGPSP
LAQFLTNLRE GFSSAVASST RAVANFL