Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Nther_2162 |
Symbol | |
ID | 6316026 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Natranaerobius thermophilus JW/NM-WN-LF |
Kingdom | Bacteria |
Replicon accession | NC_010718 |
Strand | - |
Start bp | 2288892 |
End bp | 2290568 |
Gene Length | 1677 bp |
Protein Length | 558 aa |
Translation table | 11 |
GC content | 37% |
IMG OID | 642644549 |
Product | putative sigma54 specific transcriptional regulator |
Protein accession | YP_001918316 |
Protein GI | 188586771 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 27 |
Fosmid unclonability p-value | 0.000345974 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | TTGGGAAGTT ATCAAAAGAA TTTAAATGAC AACCTAAATG ATAGGGATAG CAACACTTTT GAAAGTTTAG CCAAGAGCTT ACCCCTTTTG GCTAAAGTGA TTGGTGGTTA TGCCACTATT ACTGACAAAA AAGGGGTCAG GCTGAAGGTT ATTGATTCCA ATGGGAAGCA GCTAGAGCAC CTGGAAGACC TACAGTATGA GTTAGCCAGG GAAGCTGCTA AAAAAGGGGA AGCAGTCTAC GGTAATAGCC AGCTAAAACA TAATGCTGAA GCTTGGTGTC TACCAGTTGG CGATTATGTG CTCTGCTGCA GTAAGGCGGA AGTGGCAGAA CGAAACAGGA ATCTTGAAGA AGCTTTATTG GCATCTTTAC CTTATATTGC AAAAGTAGCA GGGGGACAAG CCGTCCTCTT TGATGATGAA GGAAAAAGAC TTAATGCAGT TAATTCCAAG GGAGATGTCA ACAATCAATT ACTTGGCAAA GTTAGTGAAG CCGCCAAGGA ATGTATGAAA GCTCAAAAGC CTGTACTGGG GAAATCTACT TTTATCAGTG GTGCCAGTGC TGTTAGGATT CCCATTACTA AGGAAATTGG ATTTGGATTT AATAATGAAG ATACAGCTCT TAAAAATCAA AAGCTTTTAG AAGAAGTTAA AAAATATCAG ACTGCTAAAT ACAATTTTAC TGACATAATT GGTGAAAGTC AGCAGATGAG AAAAGCTAAA GAATTGGGAG AAGCTGCTGC CAGTTCCGAT TCAAGTGTAC TAATTTGCGG TGAGACAGGT ACTGGTAAAG AATTATTTGC CCAATCAATT CACAATGCAA GCTATAGATG CAGTAAACCT TTTATAGCTA TTAATTGTGC TGCACTTCCG CCATCATTGA TCGAGAGTAA TTTATTCGGT TATGTGGAAG GAGCTTTTAC TGGCGCTAAA AAAGGTGGAG CTACTGGAGT TTTTGAAAAA GCTAATAATG GAACTTTATT TTTGGACGAA ATTAGCGAAA TGGACTTGGA TCTACAGTCA AAATTATTGC GGGTATTACA AGAAAAAGAA GTCACTAGAA TTGGTGGTCG CAAGGTAATT CCCTTAAACC TACGAATAAT TGCAGCTACT AACAGGAACT TGGAAGACAT GATTCAAAAG GGACAGTTTA GACGAGATTT ATTTTTTAGA TTAAATGTAA TAGAAGTTAA ATTACCACCA TTAAGAGATA TGAAAGAAGA TATCCCCTTG CTTGTTAATG AAACAATTAT TAAAATGAAT TCGATTTTCG GTAAGGCCAT TAAGGGTGTC GACAAAGAAG CGCTGGAAAT GCTGATAAAT TATGATTGGC CTGGAAATGT ACGAGAATTA TATAACTGTA TAGAAAGAGC TTTTAATCTG ATTGGTGATG ATAATTACAT TAGAAAAAAG CATTTAAACT TTAAATTTAA TAATGGCAAT GGTATTACAG CCCAGAATTA CATGGAGGAA ATAGAAGATA CCGAAGGTAA TCCAATTAAT CTAGATAATG ATACAGGACA AAGAAGTCTC GATGATATAG TTGCTAATTA CGAAAAACAA GTAATTGAGG CAGTGTTGAA AGAAGTTAAA GGAATTAGGG CCAAAGCTGC CAAAAGATTA AATATAAGTC CGGCTACATT GTGGAGAAAA ATGAAAAAGT TAAATATTGA GGGTTAA
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Protein sequence | MGSYQKNLND NLNDRDSNTF ESLAKSLPLL AKVIGGYATI TDKKGVRLKV IDSNGKQLEH LEDLQYELAR EAAKKGEAVY GNSQLKHNAE AWCLPVGDYV LCCSKAEVAE RNRNLEEALL ASLPYIAKVA GGQAVLFDDE GKRLNAVNSK GDVNNQLLGK VSEAAKECMK AQKPVLGKST FISGASAVRI PITKEIGFGF NNEDTALKNQ KLLEEVKKYQ TAKYNFTDII GESQQMRKAK ELGEAAASSD SSVLICGETG TGKELFAQSI HNASYRCSKP FIAINCAALP PSLIESNLFG YVEGAFTGAK KGGATGVFEK ANNGTLFLDE ISEMDLDLQS KLLRVLQEKE VTRIGGRKVI PLNLRIIAAT NRNLEDMIQK GQFRRDLFFR LNVIEVKLPP LRDMKEDIPL LVNETIIKMN SIFGKAIKGV DKEALEMLIN YDWPGNVREL YNCIERAFNL IGDDNYIRKK HLNFKFNNGN GITAQNYMEE IEDTEGNPIN LDNDTGQRSL DDIVANYEKQ VIEAVLKEVK GIRAKAAKRL NISPATLWRK MKKLNIEG
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