Gene Nther_1894 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNther_1894 
Symbol 
ID6314622 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNatranaerobius thermophilus JW/NM-WN-LF 
KingdomBacteria 
Replicon accessionNC_010718 
Strand
Start bp1986465 
End bp1987085 
Gene Length621 bp 
Protein Length206 aa 
Translation table11 
GC content35% 
IMG OID642644276 
ProductRNA polymerase, sigma-24 subunit, ECF subfamily 
Protein accessionYP_001918053 
Protein GI188586508 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02985] RNA polymerase sigma-70 factor, Bacteroides expansion family 1 


Plasmid Coverage information

Num covering plasmid clones33 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones56 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGACAATTA TGAAATCTAA TGATGAGTTC TTGGTAAAAC AATGTCAAAA TGGTCATTTA 
GATGCTTTTG AAGAGCTAGT ACATAAATAT CACCAAAAGG TTTATTCACT GTGCTATAGG
TTTTCAGGAA ATCACGATGA TGCTAATGAC CTGGCACAAG AAGCTTTTAT TCGGGTTTAT
CATTCCATAA ACAAATTTCA TTTTAAATCC GCATTTTCAA CCTGGTTGTA CCGAGTCACT
TCTAATGTGT GTCTTGATGA AATGAGAAAA CGGAAACGTA AATCTTCAGT ATCTTTAGAT
TCGCCTATGG AAACTGATGA TGGGGAATTG TATTTTAATT TACCTGATCA AAAATTCAAT
CCGGAATTAA TGGCAGAGCG TAAGGACGTT CAAGAAATTG TACACAAAGC TATTCAAGAA
CTACCAAAAG ATCAAAAGTT AACATTGCTT TTACGAGAAA TGGAAGGTTT TTCATATGAC
GAAATGGCAG AGGTGATGAA TGTTTCCGTG GGAACTGTCA AGTCGCGTTT GAGTAGGGCT
AGAAACAATT TAAAGGAAAT CTTAGTCCAA AAAACGGAAC TTTTTCCAGA TAAATCACAT
CTAAAGGGTA AGGAGGTGTA A
 
Protein sequence
MTIMKSNDEF LVKQCQNGHL DAFEELVHKY HQKVYSLCYR FSGNHDDAND LAQEAFIRVY 
HSINKFHFKS AFSTWLYRVT SNVCLDEMRK RKRKSSVSLD SPMETDDGEL YFNLPDQKFN
PELMAERKDV QEIVHKAIQE LPKDQKLTLL LREMEGFSYD EMAEVMNVSV GTVKSRLSRA
RNNLKEILVQ KTELFPDKSH LKGKEV